BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0043.p (230 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3073 [M] COG2148 Sugar transferases involved in lipopolysacch... 214 7e-56 all2285_2 [M] COG2148 Sugar transferases involved in lipopolysac... 164 1e-40 sll1535 [M] COG2148 Sugar transferases involved in lipopolysacch... 163 2e-40 all4719 [M] COG2148 Sugar transferases involved in lipopolysacch... 162 3e-40 all4160_2 [M] COG2148 Sugar transferases involved in lipopolysac... 160 1e-39 >CAC3073 [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis Length = 222 Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 137/199 (68%), Gaps = 1/199 (0%) Query: 31 SYLVMKRIIDIFFSAXXXXXXXXXXXXXXXXXKLEDPKGKVFFRQNRVGKDEKLFPMYKF 90 Y ++KRIID+F S KL D KG + F Q RVG++ ++F MYKF Sbjct: 24 GYFIIKRIIDVFGSLVGIIFLSPVMLIVIVAIKL-DSKGPIIFSQKRVGQNGRIFNMYKF 82 Query: 91 RSMVSNAEELKANLMAYNEVSGAMFKIKNDPRITRIGRFLRKTSIDELPQLWNVLLGHMS 150 RSMV NAE L L NE+SG MFK+ +DPRIT++GRF+RKTS+DELPQL+NVL GHMS Sbjct: 83 RSMVENAERLLGKLQDKNEMSGPMFKMSDDPRITKVGRFIRKTSLDELPQLFNVLRGHMS 142 Query: 151 LVGPRPPLVEEVAQYTDYDKQRLMVTPGCTGYWQVNARNSVGFDEMVQLDLTYISIRSTM 210 LVGPRP L EV ++ ++ K++ MV PG T YWQV R+S+GF+E ++LDL YI RST Sbjct: 143 LVGPRPNLPNEVKEFNEFQKRKFMVKPGLTCYWQVMGRSSIGFEEWIELDLKYIKERSTF 202 Query: 211 LDLKIIAKTGLMLLGSKDA 229 +DLK+I +T +L G K+A Sbjct: 203 VDLKLIFRTFFLLFGDKNA 221 >all2285_2 [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis Length = 214 Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/196 (46%), Positives = 120/196 (61%), Gaps = 5/196 (2%) Query: 35 MKRIIDIFFSAXXXXXXXXXXXXXXXXXKLEDPKGKVFFRQNRVGKDEKLFPMYKFRSMV 94 MKR IDI + KL+ P G V F Q R G + F ++KFRSMV Sbjct: 20 MKRAIDIVGAVIGLSVTAVLFVPIAIAIKLDSP-GPVLFSQTRCGWMGRRFRIWKFRSMV 78 Query: 95 SNAEELKANLMAYNEVSGAMFKIKNDPRITRIGRFLRKTSIDELPQLWNVLLGHMSLVGP 154 +NAE LK + N+ SGA FK DPRITR+GRFLRKTS+DE PQ WN+L G MSLVG Sbjct: 79 TNAEALKDTIP--NQASGAFFKNDKDPRITRVGRFLRKTSLDEFPQFWNILTGDMSLVGT 136 Query: 155 RPPLVEEVAQYTDYDKQRLMVTPGCTGYWQVNARNSV-GFDEMVQLDLTYISIRSTMLDL 213 RPP E+ Y + QRL V PG +G WQVN R+ + F++++QLDL Y + S + DL Sbjct: 137 RPPTPNELEHYEVANWQRLDVKPGLSGEWQVNGRSKIRNFEDVIQLDLRYQNNWSLVYDL 196 Query: 214 KIIAKTGLMLLGSKDA 229 K+I KT ++++ KD+ Sbjct: 197 KLILKT-IIVVFKKDS 211 >sll1535 [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis Length = 243 Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 128/226 (56%), Gaps = 12/226 (5%) Query: 10 YEAVLPKLYMLHAKEGSKEMD-SYLVMKRIIDIFFSAXXXXXXXXXXXXXXXXXKLEDPK 68 Y V P+ Y +GS+ + V KR+ DI FS + P Sbjct: 22 YPTVSPRRY-----QGSRSSSLTGTVAKRVFDICFSLSVLVLCSPLYLAIALMIAVSSP- 75 Query: 69 GKVFFRQNRVGKDEKLFPMYKFRSMVSNAEELKANLMA----YNEVSGAMFKIKNDPRIT 124 G +F+ Q RVG+ K F KFR+MV+NA+E+ LMA E FK++NDPRIT Sbjct: 76 GPIFYVQERVGRKFKRFKCIKFRTMVTNADEVLEKLMAGCPQTREEFEKNFKLRNDPRIT 135 Query: 125 RIGRFLRKTSIDELPQLWNVLLGHMSLVGPRPPLVEEVAQYTDYDKQRLMVTPGCTGYWQ 184 IG+FLR TS+DE PQ WNVL G MSLVGPRP + EE+ +Y Q L + PG TG WQ Sbjct: 136 WIGKFLRLTSLDEFPQFWNVLKGDMSLVGPRPLVPEELHKYGRQINQVLSIKPGLTGLWQ 195 Query: 185 VNARNSVGFDEMVQLDLTYISIRSTMLDLKIIAKT-GLMLLGSKDA 229 V+ RN + + E VQ+D+ Y+ R+ LDL IIAKT G+ML + + Sbjct: 196 VSGRNDIPYPERVQIDVYYVYYRTMTLDLLIIAKTLGVMLFPNNNG 241 >all4719 [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis Length = 243 Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 90/197 (45%), Positives = 118/197 (59%), Gaps = 4/197 (2%) Query: 35 MKRIIDIFFSAXXXXXXXXXXXXXXXXXKLEDPKGKVFFRQNRVGKDEKLFPMYKFRSMV 94 KR +DI S KL+ P G +FF Q R G + F ++KFRSMV Sbjct: 50 FKRCLDILGSLVGLGILAIAFLPIAIAIKLDSP-GPIFFSQERYGLRGRPFHIWKFRSMV 108 Query: 95 SNAEELKANLMAYNEVSGAMFKIKNDPRITRIGRFLRKTSIDELPQLWNVLLGHMSLVGP 154 ++AE LK + NE G +FK KND R+T++GR LR TS+DELPQ WNVL+G MSLVG Sbjct: 109 NDAERLKT--LVDNEADGLIFKNKNDFRVTKVGRLLRSTSLDELPQFWNVLMGDMSLVGT 166 Query: 155 RPPLVEEVAQYTDYDKQRLMVTPGCTGYWQVNARNSV-GFDEMVQLDLTYISIRSTMLDL 213 RPP +EVA+Y D QRL V PG TG WQVN R+ V F+++V LDL Y + + DL Sbjct: 167 RPPTADEVAKYNDRHWQRLNVKPGLTGEWQVNGRSHVKDFEQIVDLDLQYQNNWHPLYDL 226 Query: 214 KIIAKTGLMLLGSKDAY 230 +I KT +++ A+ Sbjct: 227 LLIGKTIYVIVARVGAF 243 >all4160_2 [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis Length = 226 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 118/190 (62%), Gaps = 4/190 (2%) Query: 36 KRIIDIFFSAXXXXXXXXXXXXXXXXXKLEDPKGKVFFRQNRVGKDEKLFPMYKFRSMVS 95 KR +DIF + +++DP G +FF Q R G K F ++KFRSM Sbjct: 33 KRFLDIFGALVGLVITGILCIPIVIAIQIDDP-GPIFFGQIRCGWMGKRFKIWKFRSMCV 91 Query: 96 NAEELKANLMAYNEVSGAMFKIKNDPRITRIGRFLRKTSIDELPQLWNVLLGHMSLVGPR 155 +AE K+ + N+V GA FK +NDPRIT++GRFLR+TS+DE PQ WNVL G MSLVG R Sbjct: 92 DAEAKKSQV--ENQVQGAFFKNENDPRITKVGRFLRRTSLDEFPQFWNVLKGDMSLVGTR 149 Query: 156 PPLVEEVAQYTDYDKQRLMVTPGCTGYWQVNARNSV-GFDEMVQLDLTYISIRSTMLDLK 214 PP +EV +Y + QRL V PG TG WQVN R+ V F+++++LDL Y S M DLK Sbjct: 150 PPTPDEVERYEVPEWQRLDVKPGMTGEWQVNGRSKVRSFEDVIRLDLLYQKNWSLMYDLK 209 Query: 215 IIAKTGLMLL 224 +I KT +L Sbjct: 210 LIFKTVTILF 219 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,146,073 Number of extensions: 560021 Number of successful extensions: 1680 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 1617 Number of HSP's successfully gapped: 41 Length of query: 230 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 127 Effective length of database: 26,499,029 Effective search space: 3365376683 Effective search space used: 3365376683 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)