BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0017.p (329 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3646 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 435 e-122 CAC0179 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 384 e-106 BH0028 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 382 e-106 STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibi... 379 e-105 TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 379 e-105 >BH3646 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 329 Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust. Identities = 202/323 (62%), Positives = 259/323 (80%) Query: 5 ILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPG 64 +L++++L THFFT+ GEVPAVDGV L ++ GE++G+VGESGCGKSVTSLSI++LVPNPPG Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64 Query: 65 KIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRS 124 KI+SG + KG+D+V + K M+ IRG+ ++MIFQEPMTSLNPLFT+G Q+IE +R HR Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124 Query: 125 LSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPT 184 ++K++AR AV ML +VGIPR + I EYPHQLSGGMRQRVMIAM++ C P++LIADEPT Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184 Query: 185 TALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDI 244 TALDVTIQAQILDL+R LNE TA++LITHDLGVVAE+C RV VMYAG+VVEEG VR I Sbjct: 185 TALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMI 244 Query: 245 FKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQSL 304 K+P HPYT+GL++S+P++ E +RLYSIPG VP T GCRFA RC E C+ + Sbjct: 245 LKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTA 304 Query: 305 PQLKLQEDNHSCRCWLHDSQQED 327 PQL+ H CRC+L++ + ++ Sbjct: 305 PQLQQVATGHQCRCFLYEERGDE 327 >CAC0179 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 325 Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust. Identities = 179/318 (56%), Positives = 236/318 (74%) Query: 3 QPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNP 62 + +L+V+ L T+F TE G V AVD V I E L +VGESGCGKS+T++SI++L+PNP Sbjct: 3 ETLLQVKNLKTYFHTEEGTVKAVDDVSFEIKEKETLAIVGESGCGKSITAMSIMRLIPNP 62 Query: 63 PGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLH 122 PGKI G IL G+D++ +++ ++R IRG+ +S+IFQEPMTSLNP+FTVG+QI E + LH Sbjct: 63 PGKIEGGEILFDGKDLIKMRQSDIREIRGNKISLIFQEPMTSLNPVFTVGEQIEEALILH 122 Query: 123 RSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADE 182 + + KK A+ A+ ML V IPR E I YPH+LSGGMRQRV+IAM++SCSP LLIADE Sbjct: 123 KKMDKKQAKREAIKMLTMVRIPRAEEIYKAYPHELSGGMRQRVVIAMAISCSPRLLIADE 182 Query: 183 PTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVR 242 PTTALDVTIQAQILD++R+L E+ T+++LITHDLG+VAEM V VMYAGK+VE+ V Sbjct: 183 PTTALDVTIQAQILDIMRELKEKVNTSIILITHDLGIVAEMADYVVVMYAGKIVEKAPVI 242 Query: 243 DIFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQ 302 +++KNP HPYT GL++S P + +++LYSI G VP +GC F PRCS +ICR+ Sbjct: 243 ELYKNPKHPYTVGLLKSKPVINRLQDKLYSIEGQVPNPLDMPEGCYFNPRCSKAKDICRK 302 Query: 303 SLPQLKLQEDNHSCRCWL 320 P LK + HS CWL Sbjct: 303 KQPNLKKVSEGHSVSCWL 320 >BH0028 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 347 Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/327 (57%), Positives = 240/327 (73%), Gaps = 3/327 (0%) Query: 2 VQPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPN 61 + IL+V +L T FFTE EV AVDGV + G+ LG+VGESG GKS+TSLSILKL+ Sbjct: 9 AETILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLI-Q 67 Query: 62 PPGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRL 121 PGK+V G I KG+++V E MR IRG+ +SMIFQEPMTSLNP++TVGQQI E+ R+ Sbjct: 68 EPGKVVGGEINFKGENLVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISESFRI 127 Query: 122 HRSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIAD 181 H L KK+A +VDML+ VGIP PE + +YPH+LSGGMRQRVMIAM+++C+PELLIAD Sbjct: 128 HEKLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIAD 187 Query: 182 EPTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSV 241 EPTTALDVTIQAQIL+L++ L + G ++++ITHDLGVVAE C VAVMY GKVVE V Sbjct: 188 EPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADV 247 Query: 242 RDIFKNPLHPYTRGLIQSVPR--MGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEI 299 + +FKNP HPYT GL+ S+PR + E L I G+VP + +GCRFAPRC +I Sbjct: 248 KTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDI 307 Query: 300 CRQSLPQLKLQEDNHSCRCWLHDSQQE 326 C++ LP L+ E+ + RCW++ Q + Sbjct: 308 CKERLPDLETDENGNQIRCWVYSEQWD 334 >STM0501 [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs Length = 305 Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust. Identities = 0/320 (0%), Positives = 0/320 (0%), Gaps = 2/320 (0%) Query: 8 VEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPGKIV 67 + L + + + G ++ + + G+ + Sbjct: 1 MLILIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPGLSLVVPFM-DRIGRKI 59 Query: 68 SGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRSLSK 127 + + + K+ N+ DAV I + + I + + + Sbjct: 60 NMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVSNLELAIINLTMTNIRTV 119 Query: 128 KDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPTTAL 187 + + ++ I I + G R+ I + + + A Sbjct: 120 LGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIRDVRPPAELISSMNAQMKAE 179 Query: 188 DVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDIFKN 247 + + E + L E A + E R Sbjct: 180 RTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSAFLQAEARERSAEAEARATQMV 239 Query: 248 PLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVME-ICRQSLPQ 306 + + + GS + + + Sbjct: 240 SEAIAAGDIQAINYFVAQKYTEALQQIGSANNSKVVMMPLDASSLMGAIAGISELVKDSA 299 Query: 307 LKLQEDNHSCRCWLHDSQQE 326 Sbjct: 300 319 >TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 327 Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/320 (57%), Positives = 239/320 (74%), Gaps = 2/320 (0%) Query: 8 VEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPGKIV 67 +E L T+F+TE G V AVDGV + GE LG+VGESG GKSVTSLSI++L+ + GKIV Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLL-DQNGKIV 59 Query: 68 SGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRSLSK 127 G+I+ KG++++ L E EMR IRG ++MIFQEPM +LNP+FT+G QI+E + LH+++S+ Sbjct: 60 DGKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSE 119 Query: 128 KDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPTTAL 187 K+AR A+D+LRKVGIP PE +DEYPHQLSGGMRQR MIAM++SC P LLIADEPTTAL Sbjct: 120 KEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTAL 179 Query: 188 DVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDIFKN 247 DVTIQAQIL+L+++L +E G A++LITHD+GVVAEM +VAVMYAGKVVE G V+ IF Sbjct: 180 DVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTE 239 Query: 248 PLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVME-ICRQSLPQ 306 P HPYT L++S+PR+ +ERL SIPG+VP GC+F PRC + C P+ Sbjct: 240 PKHPYTYALLESIPRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPE 299 Query: 307 LKLQEDNHSCRCWLHDSQQE 326 L+ + NH RC+ E Sbjct: 300 LEDLDGNHKVRCFFWQKLDE 319 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,339,052 Number of extensions: 1048587 Number of successful extensions: 8639 Number of sequences better than 1.0e-05: 2015 Number of HSP's gapped: 5854 Number of HSP's successfully gapped: 2195 Length of query: 329 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 222 Effective length of database: 26,037,693 Effective search space: 5780367846 Effective search space used: 5780367846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)