BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0016.p (337 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 431 e-120 BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 388 e-108 CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 378 e-105 BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 375 e-104 TM0057 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 365 e-101 >BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust. Identities = 198/322 (61%), Positives = 253/322 (78%) Query: 1 MNDNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGR 60 M LLEV+NL K + +N GFF++ ++AVD++SFSV +GE G+VGESGCGKSTTG+ Sbjct: 1 MGKPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGK 60 Query: 61 SLLRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPM 120 ++LRLIEP++GEV+F G +IT LS I+FQDP++SL+PR+T+++I+ EP+ Sbjct: 61 AILRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPL 120 Query: 121 IVHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIAD 180 IVH G KE+ VE L + VGL+ H RYPHQFSGGQRQRIGIARALA+ PKL+I D Sbjct: 121 IVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICD 180 Query: 181 EPVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGK 240 EPVSALDVS+QSQ++NLM DL++ F LTYIFIAHDLSVVKHI DRVAVMYLGR+VE+ K Sbjct: 181 EPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATK 240 Query: 241 NKLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVC 300 ++L++ P+HPYT+ALLSAVP PDPD KE+++L+G+VPSP+N P GCAF+TRCP MDVC Sbjct: 241 DQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDVC 300 Query: 301 RSTRPPLLETGAGHLTACHLYD 322 + RP L E GH ACHLY+ Sbjct: 301 KIKRPSLHEKEKGHYVACHLYE 322 >BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 329 Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust. Identities = 181/323 (56%), Positives = 237/323 (73%), Gaps = 3/323 (0%) Query: 3 DNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGRSL 62 + +LE+R++KKY+P+ G F + +KAVD +SFS++KGET G+VGESGCGKST GR++ Sbjct: 7 ETILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTM 66 Query: 63 LRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXX-XIVFQDPFSSLDPRNTVQRILEEPMI 121 +RL +PT G++ F+G+DI+ LS +VFQDPF+SL+PR T++ I++EP Sbjct: 67 IRLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFN 126 Query: 122 VHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIADE 181 H +ER VE L VGL + RYPH+FSGGQRQRIGIARAL L P+LIIADE Sbjct: 127 THNMYTMRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELIIADE 186 Query: 182 PVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGKN 241 PVSALDVSIQ QVINLM++LQ+EF LTY+FI+HDLSVV+HI DRV VMYLG+++E+TGK+ Sbjct: 187 PVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGKH 246 Query: 242 KLYDQPQHPYTQALLSAVP--EPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDV 299 +LYD P HPYTQALLS+VP +++ER++L+GE+PSPAN P GC F+TRCP + Sbjct: 247 ELYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVAKPI 306 Query: 300 CRSTRPPLLETGAGHLTACHLYD 322 C+ P E H ACHLY Sbjct: 307 CKEQIPEFKEAAPSHFVACHLYS 329 >CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 321 Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust. Identities = 172/319 (53%), Positives = 227/319 (71%) Query: 1 MNDNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGR 60 M + +L+VRNLKKY+P+ GFF KT Y+K+VDD+SF + + E GLVGESGCGK+TTGR Sbjct: 1 MEEAILKVRNLKKYFPIKTGFFRKTTGYVKSVDDVSFDIAENEIMGLVGESGCGKTTTGR 60 Query: 61 SLLRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPM 120 +LLRL+E T GEV + G+D+ L+ ++FQDP+SSL+PR TV I+ E + Sbjct: 61 TLLRLMEKTEGEVLYRGKDLFSLNKKSLRNLRPEIQMIFQDPYSSLNPRMTVGEIVGEAL 120 Query: 121 IVHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIAD 180 + H E VE + GLA H++R+PH+FSGGQRQRIGIARAL L PK I+AD Sbjct: 121 LDHKLCTKSEVNYKVEEMITACGLASYHMRRFPHEFSGGQRQRIGIARALILNPKFIVAD 180 Query: 181 EPVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGK 240 EPVSALDVSIQ+QVINL+ +LQK+ G + +FI+HDLSVV+HIC ++ VMYLG +VE+ G Sbjct: 181 EPVSALDVSIQAQVINLLAELQKKKGFSCLFISHDLSVVQHICQKIGVMYLGSMVELAGN 240 Query: 241 NKLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVC 300 +L+ P HPYT+ALLSA+P PDP +++ R+IL+G++PSPAN P GC F+TRC + C Sbjct: 241 EELFTNPLHPYTKALLSAIPIPDPTLKRNRIILKGDIPSPANPPSGCKFHTRCNYATEKC 300 Query: 301 RSTRPPLLETGAGHLTACH 319 P E GH ACH Sbjct: 301 SKEVPEYKEVIKGHFVACH 319 >BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/325 (54%), Positives = 232/325 (71%), Gaps = 3/325 (0%) Query: 1 MNDNLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGR 60 M LL+V LK+Y+P+ G +T ++KAVDD+SF++ +GET +VGESGCGKSTTGR Sbjct: 1 MQKELLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGR 60 Query: 61 SLLRLIEPTAGEVWFEGRDITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEPM 120 ++LRL EPT G++ F+G D+ L+ I+FQDP++S++PR T++++LEE M Sbjct: 61 AILRLDEPTDGKIEFQGEDLLSLNKREMRKKRKDLQIIFQDPYASINPRQTIRQVLEEAM 120 Query: 121 IVHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIAD 180 + +R + L D VGL R+PH+FSGGQRQRIGIARAL++ PKLI+ D Sbjct: 121 EIQKVVPRDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVCD 180 Query: 181 EPVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITGK 240 E VSALDVSIQ+QVINL++ LQ+EF LTY+FI+HDL VV+HI DRV VMYLGRIVEI K Sbjct: 181 EAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADK 240 Query: 241 NKLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDVC 300 L++ PQHPYT+ALLSA+P PDP+ +KER+IL+G+VPSP + P GC F+TRCP D C Sbjct: 241 TSLFENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCPFATDKC 300 Query: 301 RSTRPPLLETG---AGHLTACHLYD 322 R+ P L GHL ACH + Sbjct: 301 RTETPELRTADYMKDGHLAACHYME 325 >TM0057 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust. Identities = 171/324 (52%), Positives = 231/324 (71%), Gaps = 7/324 (2%) Query: 4 NLLEVRNLKKYYPVNKGFFNKTQAYIKAVDDISFSVRKGETFGLVGESGCGKSTTGRSLL 63 LLEV+ LKKY+P+ KGFF K Y++AVDD+SF +++GET LVGESGCGK+TT +S+L Sbjct: 2 KLLEVKGLKKYFPLTKGFFKKVVGYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKSIL 61 Query: 64 RLIEPTAGEV--WFEGRD--ITKLSXXXXXXXXXXXXIVFQDPFSSLDPRNTVQRILEEP 119 R I+PT G+V +G+D I KLS ++FQ+P++SL+PR V+ I+ EP Sbjct: 62 RAIDPTDGDVILHLDGKDVNIAKLSRDELKPYRRYMQMIFQNPYTSLNPRMKVKEIVGEP 121 Query: 120 MIVHGAGNAKERRAAVERLADVVGLAKAHLQRYPHQFSGGQRQRIGIARALALQPKLIIA 179 ++V+G KE V L VGL ++ RYPH FSGGQRQRI IARA+AL+PKL++ Sbjct: 122 LLVNGIAKGKELEDRVAELLKAVGLRPEYMIRYPHAFSGGQRQRIVIARAIALRPKLVVC 181 Query: 180 DEPVSALDVSIQSQVINLMQDLQKEFGLTYIFIAHDLSVVKHICDRVAVMYLGRIVEITG 239 DEP SALDVSI++Q++NL+ DLQ+EF LTY+FI HDLSVV+HI DRVAVMYLG+IVE++ Sbjct: 182 DEPTSALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKIVELSS 241 Query: 240 KNKLYDQPQHPYTQALLSAVPEPDPDIRKERVILQGEVPSPANAPVGCAFNTRCPRVMDV 299 ++++ P+HPYT+ LL +VP+PDPD+R+E V ++GEVP+PAN P GC F+ RCP + Sbjct: 242 TEEIFENPKHPYTETLLRSVPKPDPDLREELVPIEGEVPNPANPPSGCYFHPRCPYAKSI 301 Query: 300 CRSTRPPLLETGAG---HLTACHL 320 C+ P G H ACH Sbjct: 302 CKEEYPEFRNLGTEDNPHYVACHF 325 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,644,322 Number of extensions: 1003024 Number of successful extensions: 8984 Number of sequences better than 1.0e-05: 1983 Number of HSP's gapped: 6505 Number of HSP's successfully gapped: 2162 Length of query: 337 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 230 Effective length of database: 26,037,693 Effective search space: 5988669390 Effective search space used: 5988669390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)