BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0015.p (555 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PM0236 [E] COG0747 ABC-type dipeptide transport system, periplas... 377 e-104 DR1290 [E] COG0747 ABC-type dipeptide transport system, periplas... 369 e-102 AGl1481 [E] COG0747 ABC-type dipeptide transport system, peripla... 368 e-101 YPO4003 [E] COG0747 ABC-type dipeptide transport system, peripla... 356 4e-98 ECs4424 [E] COG0747 ABC-type dipeptide transport system, peripla... 354 2e-97 >PM0236 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 532 Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/514 (39%), Positives = 296/514 (57%), Gaps = 21/514 (4%) Query: 56 TLILGRGGDSASLDPAIVTDGESLKI-GHQVFDSLLEYKPGTSEVQASLADSWEVSADGL 114 T + + L P + TDG ++ G +F+ L ++ GT+ V +LA+ W+VS DG Sbjct: 26 TFVYCSEASPSYLSPVLGTDGATIDASGQAMFNGLTTFERGTTNVIPALAEKWDVSEDGK 85 Query: 115 TYTFKLHPGVKFHDG------TDFNAEAVVFNFTRWSDPASEF-KFEGDSFDYYDSMFGP 167 TY F L GVKFH DFNA+ VVF+F R DP + K G S++Y+ G Sbjct: 86 TYVFHLRKGVKFHSNKDFKPTRDFNADDVVFSFNRQLDPNHPYHKVSGGSYEYF---IGM 142 Query: 168 EGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGI-----ASPAAIKEKKENFKNE 222 + +I +V+ VD TV+ +L P APFL N+AM I A A + E + Sbjct: 143 DMQNIIDKVEKVDDYTVKISLKVPNAPFLANLAMDFASIYSAQYADAMAKAKTPEKLDSA 202 Query: 223 PVGTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDLM 282 P+GTGP+ F ++ + ++ NYW +G K+ +++ PD S R+ LQ GE Sbjct: 203 PIGTGPFEFVSYQKDSAVRYKAFENYW-QGKAKIDRLVFSITPDASVRYAKLQKGECHAA 261 Query: 283 EDLSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIIDA 342 +P D++ L+ ++ + + +P NV YL FN+++ PFDNVKVRQALNYAVNK AII++ Sbjct: 262 PYPNPADIAKLKADSNITLLTKPGLNVGYLNFNVQKAPFDNVKVRQALNYAVNKDAIIES 321 Query: 343 FFSGQATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVSR 402 + G A NP+PP++W YND VKDY Y EAG+ G L+AMPVSR Sbjct: 322 VYQGAGQVAKNPIPPTMWSYNDEVKDYAYDPEKAKALLKEAGFENGF--ETDLWAMPVSR 379 Query: 403 PYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPDN 462 PY P+ +++AE +QADWEK+GVK I S EW YL +AG+ M+GWTGDNGDPDN Sbjct: 380 PYNPNARRMAELVQADWEKVGVKAKIVSYEWGEYLKRMRAGDH-QTGMMGWTGDNGDPDN 438 Query: 463 FLYTLLDKDAI-PGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPWIP 521 FL TLL A+ G+N + + +++ + L+ A + TD A+R+ LY+QAQ + K APWI Sbjct: 439 FLNTLLSCAAVESGSNYANFCHKEFNDLVTKAAQVTDPAERTALYQQAQLVFKEQAPWIT 498 Query: 522 LVHTTPLLAAKANLKGYVPGPTGTEYYSEIYFEQ 555 + H+T + +KGYV P G + + E+ Sbjct: 499 IAHSTTYFPVRKEVKGYVIDPFGLHNFYAVELEK 532 >DR1290 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 527 Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/509 (39%), Positives = 299/509 (58%), Gaps = 16/509 (3%) Query: 53 QQDTLILGRGGDSASLDPAIVTDGESLKIGHQVFDSLLEYKPGTSEVQASLADSWEVSAD 112 Q TL+ G G+ SL+PA +TDG S+ + Q++D+L+++K GT+++ LA SW+ +A+ Sbjct: 19 QSGTLVFGGNGEPVSLEPANITDGISINVQRQIYDTLIDFKDGTTQLVPGLATSWKPNAN 78 Query: 113 GLTYTFKLHPGVKFHDGTDFNAEAVVFNFTRWSDPASEFKF--EGDSFDYYDSMFG---P 167 ++TF L GVKFHDGT FNA+AVVFN TRW D + +G +F+ + G Sbjct: 79 ATSWTFTLRKGVKFHDGTPFNADAVVFNLTRWWDKNHPYSLRKDGRTFEIVGDLLGGYKG 138 Query: 168 EGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASPAAIKEKKENF---KNEPV 224 + + VIK V V+ +TV+ L +P + F IA FGIASP AIKE+ + + V Sbjct: 139 DATSVIKNVVKVNDSTVRVDLTKPSSVFPDVIASGYFGIASPTAIKEQGAKYGTPAGKAV 198 Query: 225 GTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDLMED 284 GTGP++F+ WK D +TL N NYW K++ +I+R+I D S R N L+ G ID D Sbjct: 199 GTGPFIFQSWKSGDRVTLTANKNYWGTKA-KVATVIIRAIKDPSQRLNELRAGTIDFAND 257 Query: 285 LSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIIDAFF 344 + PD L ++ + L ++RP FNV ++ N + K N KVRQA++ A+NK+AI+DAF+ Sbjct: 258 MVPDSLKAIQADKNLVAVKRPSFNVGFVSLNNRNKYLKNAKVRQAISMALNKKAIVDAFW 317 Query: 345 SGQATAAVNPMPPSLWGYNDAV--KDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVSR 402 G + + +PP L YN + DY++ +AGYP G + L+ MPVSR Sbjct: 318 PGLGQSNASFVPPDLARYNSSKVPADYKFDPAAAKKLLADAGYPNGF--SMDLWYMPVSR 375 Query: 403 PYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPDN 462 PY P K +AEA+ AD IG+K +++ +WA YL+D D+YM+GWTGD G PDN Sbjct: 376 PYFPSPKPIAEAMAADLSAIGIKVNLKTEDWAKYLEDRNKAPGFDMYMIGWTGDYGHPDN 435 Query: 463 FLYTLLDKDAIPGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPWIPL 522 F + G++ Y + ++ LL + +A+R +Y Q E+ A IP+ Sbjct: 436 FYSAYYGPN---GSSDIGYNSVQIQNLLEKGRAAKTEAERKSIYGQIHELTYNAAYRIPI 492 Query: 523 VHTTPLLAAKANLKGYVPGPTGTEYYSEI 551 VH+ PL AA+ +KG+VP P G+E ++ I Sbjct: 493 VHSQPLAAARTYVKGWVPSPLGSESFNNI 521 >AGl1481 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 134 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 0/505 (0%), Positives = 0/505 (0%), Gaps = 23/505 (4%) Query: 56 TLILGRGGDSASLDPAIVTDGESLKI-GHQVFDSLLEYKPGTSEVQASLADSWEVSADGL 114 + G +A + ++ Q + + + S + + Sbjct: 26 FTVSGVPMVTAVSYKSFQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETS 85 Query: 115 TYTFKLHPGVKFHD------GTDFNAEAVVFNFTRWSDPASEFK--FEGDSFDYYDSMFG 166 V + Sbjct: 86 GSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKGICDII 145 Query: 167 PEGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASP--AAIKEK---KENFKN 221 Sbjct: 146 --- 202 Query: 222 EPVGTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEIDL 281 Sbjct: 203 - 261 Query: 282 MEDLSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAIID 341 Sbjct: 262 321 Query: 342 AFFSGQATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMPVS 401 Sbjct: 322 --- 378 Query: 402 RPYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGDPD 461 Sbjct: 379 438 Query: 462 NFLYTLLDKDAI--PGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAPW 519 Sbjct: 439 498 Query: 520 IPLVHTTPLLAAKANLKGYVPGPTG 544 Sbjct: 499 523 >YPO4003 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 535 Score = 356 bits (914), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 199/513 (38%), Positives = 288/513 (56%), Gaps = 21/513 (4%) Query: 53 QQDTLILGRGGDSASLDPAIVTDGESLKIGHQ-VFDSLLEYKPGTSEVQASLADSWEVSA 111 Q TL+ G +P + T G + +++ L+E+K GT+E++ SLA+ WEVS Sbjct: 27 QAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKIGTTEIEPSLAERWEVSE 86 Query: 112 DGLTYTFKLHPGVKFHDG------TDFNAEAVVFNFTRWSDPASEF-KFEGDSFDYYDSM 164 DG TYTF L GVK+ D DFNA+ V+++F R D + + K G S++Y+ M Sbjct: 87 DGKTYTFYLRKGVKWQDNKDFKPTRDFNADDVIYSFMRQKDDKNPYHKVSGGSYEYFQGM 146 Query: 165 FGPEGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASPAAIKE-----KKENF 219 + +I V VD TV+F L +P++PFL ++AM I S E Sbjct: 147 GMGD---LITNVVKVDDNTVRFELTRPESPFLADLAMDFASILSAEYADNMLKAGTPEKV 203 Query: 220 KNEPVGTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEI 279 P+GTGP+ ++++ + I P +W PK+ +++ PD S R+ LQ E Sbjct: 204 DLNPIGTGPFQLQQYQKDSRILYKAFPGFWGTK-PKIDRLVFSITPDASVRYAKLQKNEC 262 Query: 280 DLMEDLSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAI 339 +M +P D++ ++ + + +E+P NV YL FN+++KP DN+KVRQAL AVNK AI Sbjct: 263 QIMPYPNPADIARMKEDKTINLMEQPGLNVGYLSFNIEKKPLDNLKVRQALTMAVNKDAI 322 Query: 340 IDAFFSGQATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMP 399 IDA + G AA N +PP++WGYND VKDY Y EAG P+G + L+AMP Sbjct: 323 IDAVYQGAGQAAKNLIPPTMWGYNDDVKDYAYDPAKAKELLKEAGLPDGF--SIDLWAMP 380 Query: 400 VSRPYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGD 459 V RPY P+ +++AE IQ+DW KIGVK I + EW YL K GE + + M+GWTGDNGD Sbjct: 381 VQRPYNPNARRMAEMIQSDWAKIGVKAKIVTYEWGEYLKRAKDGEHETV-MMGWTGDNGD 439 Query: 460 PDNFLYTLLDKDAIP-GNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAP 518 PDNF TL DA G+N S + + L+ A+ E D KR LYKQAQ ++ AP Sbjct: 440 PDNFFATLFSCDAAKQGSNYSKWCYKPFEDLIQPARAEADHDKRVALYKQAQVVMNEQAP 499 Query: 519 WIPLVHTTPLLAAKANLKGYVPGPTGTEYYSEI 551 + + H+T + +KGYV P G ++ + Sbjct: 500 ALIIAHSTVYEPVRKEVKGYVVDPLGKHHFDNV 532 >ECs4424 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Length = 535 Score = 354 bits (909), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 201/516 (38%), Positives = 289/516 (56%), Gaps = 21/516 (4%) Query: 53 QQDTLILGRGGDSASLDPAIVTDGESLKIGHQ-VFDSLLEYKPGTSEVQASLADSWEVSA 111 Q TL+ G +P + T G + +++ L+E+K GT+EV LA+ WEVS Sbjct: 27 QAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSE 86 Query: 112 DGLTYTFKLHPGVKFHDGTDF------NAEAVVFNFTRWSDPASEF-KFEGDSFDYYDSM 164 DG TYTF L GVK+HD +F NA+ VVF+F R + + + K G S++Y++ M Sbjct: 87 DGKTYTFHLRKGVKWHDNKEFKPTREMNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGM 146 Query: 165 FGPEGSRVIKEVKAVDATTVQFTLNQPQAPFLQNIAMTSFGIASP----AAIKE-KKENF 219 PE +I EVK VD TVQF L +P+APFL ++AM I S A +K E Sbjct: 147 GLPE---LISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKL 203 Query: 220 KNEPVGTGPYVFKEWKHNDSITLDKNPNYWKEGLPKLSKIIVRSIPDNSARFNALQNGEI 279 P+GTGP+ ++++ + I YW P++ ++ PD S R+ LQ E Sbjct: 204 DLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTK-PQIDTLVFSITPDASVRYAKLQKNEC 262 Query: 280 DLMEDLSPDDLSTLEGNTGLQKIERPPFNVSYLGFNLKQKPFDNVKVRQALNYAVNKQAI 339 +M +P D++ ++ + + +E P NV YL +N+++KP D+VKVRQAL YAVNK AI Sbjct: 263 QVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAI 322 Query: 340 IDAFFSGQATAAVNPMPPSLWGYNDAVKDYEYXXXXXXXXXXEAGYPEGLPDPVTLYAMP 399 I A + G +A N +PP++WGYND V+DY Y EAG +G + L+AMP Sbjct: 323 IKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGF--SIDLWAMP 380 Query: 400 VSRPYMPDGKKVAEAIQADWEKIGVKTVIESPEWATYLDDTKAGEKDDIYMLGWTGDNGD 459 V RPY P+ +++AE IQADW K+GV+ I + EW YL K GE + M+GWTGDNGD Sbjct: 381 VQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTV-MMGWTGDNGD 439 Query: 460 PDNFLYTLLDKDAI-PGNNRSFYVNEKLHTLLINAQKETDQAKRSDLYKQAQEIIKADAP 518 PDNF TL A G+N S + + L+ A+ D KR +LYKQAQ ++ AP Sbjct: 440 PDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAP 499 Query: 519 WIPLVHTTPLLAAKANLKGYVPGPTGTEYYSEIYFE 554 + + H+T + +KGYV P G ++ + E Sbjct: 500 ALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE 535 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 42,104,872 Number of extensions: 1879703 Number of successful extensions: 3930 Number of sequences better than 1.0e-05: 211 Number of HSP's gapped: 3201 Number of HSP's successfully gapped: 217 Length of query: 555 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 444 Effective length of database: 25,576,357 Effective search space: 11355902508 Effective search space used: 11355902508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)