BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0014.p (325 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3643 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 436 e-122 AGl1478 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 316 3e-86 BMEI0435 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tra... 306 3e-83 BS_dppB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 301 7e-82 dppB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transpo... 301 7e-82 >BH3643 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 333 Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/324 (64%), Positives = 262/324 (80%) Query: 1 MVLVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQALREQLGLDKPWLQQYFNYM 60 M+L+PVLIGMTII FSI+H IPG+PA+TILG++A+ Q+ L E+LGL++P+L QY Y+ Sbjct: 10 MLLIPVLIGMTIITFSIVHLIPGNPAQTILGEQASPQAVAELEERLGLNEPYLVQYGYYV 69 Query: 61 GDLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFD 120 DLL GD GTS+RT+ PI++EI+PY VGVNAGI+SAW+Q+S+FD Sbjct: 70 RDLLTGDFGTSLRTRAPISEEIVPYLGATLELTFFAMLFAVVVGVNAGIISAWKQHSFFD 129 Query: 121 YTAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAG 180 Y M++AL+GVSMPIFWL LM+Q +FA +L W P+ GR + R P++SIT LYV+D I+ Sbjct: 130 YACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPIQSITGLYVLDAILHW 189 Query: 181 QWGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYK 240 +W + +KHL+LP+IALGTIPMAIIARMTRSSMLEV+ SDYIRT AKG QF+V+YK Sbjct: 190 RWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIRTVHAKGSSQFVVIYK 249 Query: 241 HALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILII 300 HALKNA+IPVLTV GLQTG LLGGA+LTETIF+WPG+GRYIYEAI+ RDYPVIQ+GIL++ Sbjct: 250 HALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAITYRDYPVIQSGILVV 309 Query: 301 AFIFVVINLLVDLLYAAIDPRINY 324 A +FVVINL+VDLLY+ IDPRI Y Sbjct: 310 AIMFVVINLIVDLLYSYIDPRIKY 333 >AGl1478 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 134 Score = 316 bits (809), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 0/324 (0%), Positives = 0/324 (0%), Gaps = 1/324 (0%) Query: 3 LVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQA-LREQLGLDKPWLQQYFNYMG 61 + + +A Q + + Sbjct: 12 TFSSPAFAASCEKNFTVSGVPMVTAVSYKSFQELPKAKAPAVLQKLAQAVAAEGFSGIQI 71 Query: 62 DLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFDY 121 + + T + + R+ Sbjct: 72 NKALSSIDAHQETSGSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKGICDII 131 Query: 122 TAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAGQ 181 Sbjct: 132 191 Query: 182 WGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYKH 241 Sbjct: 192 251 Query: 242 ALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILIIA 301 Sbjct: 252 311 Query: 302 FIFVVINLLVDLLYAAIDPRINYK 325 Sbjct: 312 335 >BMEI0435 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 347 Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 148/324 (45%), Positives = 215/324 (66%), Gaps = 1/324 (0%) Query: 3 LVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQA-LREQLGLDKPWLQQYFNYMG 61 LVP IG+TI+ F+ + +PGDP + G++ + A L QLG D+P +QY Y+ Sbjct: 24 LVPTFIGITIVAFAFVRVLPGDPVLLMAGERGVSPERHAELMAQLGFDRPIWEQYLLYVW 83 Query: 62 DLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFDY 121 +LL GD G S+ TK P+ E +G+ AG+++A ++ SWFD Sbjct: 84 NLLHGDFGQSLVTKKPVLVEFFALFPATVELSICAIILAVLIGIPAGVIAAVKRGSWFDQ 143 Query: 122 TAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAGQ 181 M I+LVG SMPIFW L+ + F+ L W P GR+ + ++ +ID++++GQ Sbjct: 144 GLMGISLVGYSMPIFWWALLLIIFFSGVLQWTPVSGRISLLYYFTPVSGFMLIDSLLSGQ 203 Query: 182 WGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYKH 241 G + HLILP+I L TIP+A+IAR TRS+MLEV+ DY+RTA+AKG+P +V H Sbjct: 204 KGAFLSAASHLILPTIVLATIPLAVIARQTRSAMLEVLGEDYVRTARAKGLPIRRIVGLH 263 Query: 242 ALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILIIA 301 AL+NA+IPV+T +GLQ G L+ GA+LTETIF+WPG+G+++ ++IS RDYPV+Q+G+L+IA Sbjct: 264 ALRNAMIPVITTIGLQVGVLMAGAILTETIFSWPGIGKWMLDSISRRDYPVVQSGLLLIA 323 Query: 302 FIFVVINLLVDLLYAAIDPRINYK 325 FI +V+NL+VDLLY I+PRI +K Sbjct: 324 FIIMVVNLVVDLLYGLINPRIRHK 347 >BS_dppB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 308 Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 0/331 (0%), Positives = 0/331 (0%), Gaps = 10/331 (3%) Query: 2 VLVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQA-LREQLGLDKPWLQQYFNYM 60 + ++ +T + F ++ IPG P G Q Y + Sbjct: 11 AMAATILVITTLTFVLMKVIPGSPFNEERGTNEAVQKNLEAYYHLDDPLIFQYIFYLKSI 70 Query: 61 GDLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFD 120 G E + + + Sbjct: 71 ITFDFGPSIKKPSDSVNDMLERGFPVSFELGMTAIVIAVISGLVLGVIAALRRNGFLDYA 130 Query: 121 YTAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGR------MDQRHPVESITNLYVI 174 ++ + + + I L++Q LKL + + + +I Sbjct: 131 AMSLAVLGISIPNFILATLLIQQFAVNLKLFPAATWTSPIHMVLPTAALA---VGPMAII 187 Query: 175 DTIIAGQWGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQ 234 + ++ T + L + + + + M + + + G Sbjct: 188 ARLTRSSMVEVLTQDYIRTAKAKGLSPFKIIVKHALRNALMPVITVLGTLVASILTGSFV 247 Query: 235 FLVVYKHALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQ 294 ++ + + + + Y + R + Sbjct: 248 IEKIFAIPGMGKYFVESINQRDYPVIMGTTVFYSVILIIMLFLVDLAYGLLDPRIKLHKK 307 Query: 295 TGILIIAFIFVVINLLVDLLYAAIDPRINYK 325 Sbjct: 308 338 >dppB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 339 Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 148/331 (44%), Positives = 223/331 (67%), Gaps = 10/331 (3%) Query: 2 VLVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQA-LREQLGLDKPWLQQYFNYM 60 +++P IG+T++ F+ +H IPGDP + G++ + A L +LGLDKP QQY +Y+ Sbjct: 11 LVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYI 70 Query: 61 GDLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFD 120 ++ GDLG S++++ P+ +E +P VG+ G+L+A ++ S FD Sbjct: 71 WGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFD 130 Query: 121 YTAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGR------MDQRHPVESITNLYVI 174 +TA+ +AL G SMPIFW G+M +L ++ + P GR +D +P +T +I Sbjct: 131 HTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNP---LTGFMLI 187 Query: 175 DTIIAGQWGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQ 234 DT I G+ G + H+ILP+I LGTIP+A+I RMTRSSMLEV+ DYIRTA+AKG+ + Sbjct: 188 DTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTR 247 Query: 235 FLVVYKHALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQ 294 V+ HAL+NA++PV+TV+GLQ G LL GA+LTETIF+WPG+GR++ +A+ RDYPV+Q Sbjct: 248 MRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQ 307 Query: 295 TGILIIAFIFVVINLLVDLLYAAIDPRINYK 325 G+L++A + +++NLLVDLLY ++PRI +K Sbjct: 308 GGVLLVATMIILVNLLVDLLYGVVNPRIRHK 338 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,416,617 Number of extensions: 839936 Number of successful extensions: 4960 Number of sequences better than 1.0e-05: 197 Number of HSP's gapped: 4584 Number of HSP's successfully gapped: 213 Length of query: 325 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 218 Effective length of database: 26,037,693 Effective search space: 5676217074 Effective search space used: 5676217074 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)