BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0013.p (297 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 332 4e-91 BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 263 2e-70 FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 252 5e-67 PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 233 3e-61 STM3628 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 208 1e-53 >BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 332 bits (852), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 168/298 (56%), Positives = 209/298 (70%), Gaps = 6/298 (2%) Query: 6 MNVTPQSVPADKVSG------PWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYG 59 + +TP P D+ S PWRDA++ R+NK AM G+ + Sbjct: 9 LAMTPSQKPPDEQSAKGEAISPWRDAFRQLRKNKLAMTGIVIVCFFLFIALFAPLLTTHS 68 Query: 60 FKEQELVNRLKAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGIL 119 F + +RL++PSA HWFGTDDLGRD+FTRI YGA++SL VGFFAV G+++ GT LG+L Sbjct: 69 FDGYDAASRLQSPSAEHWFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVL 128 Query: 120 AGFYGKWIDMLISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRA 179 AG+YG+W+DMLISR+FDI+LAFPS GPSL NA+ AIAIVNIP +GRLVR+ Sbjct: 129 AGYYGRWLDMLISRIFDIMLAFPSILLAIAIVAILGPSLHNAMVAIAIVNIPIFGRLVRS 188 Query: 180 KVLSLKSEEYITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXX 239 KV+SL++EE+I AARA GM N+RIL HILPNSL+PIIVQ TLG TAI+E Sbjct: 189 KVISLRAEEFIMAARAQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGL 248 Query: 240 XXQPPDPEWGKMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 Q P EWGKML+DSR +IQ APW +FPG+SIML VLGFN++GDGLRD LDP+MKN Sbjct: 249 GAQAPLAEWGKMLADSRAYIQTAPWVAIFPGMSIMLVVLGFNMIGDGLRDALDPKMKN 306 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 301 Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 180/297 (60%), Gaps = 8/297 (2%) Query: 9 TPQSVPADKVSGP--------WRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGF 60 T Q++ ++ + P W++ +K +NK AM+GL + Sbjct: 5 TEQTINSEATAAPPPNPRIQSWKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHDP 64 Query: 61 KEQELVNRLKAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILA 120 E ++N+L PSA HWFGTD GRD+FTRII+G I+L+VGFF+V+ I G LG+++ Sbjct: 65 YEPNVMNKLAEPSAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVS 124 Query: 121 GFYGKWIDMLISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAK 180 G+YG+ +D +I R+ D+LLAFP G S+ N + A+ I +IP + R+VR Sbjct: 125 GYYGRLVDTVIMRIMDVLLAFPGILLALAIISILGGSINNVIIAVGIFSIPVFARIVRGS 184 Query: 181 VLSLKSEEYITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXX 240 L+++ EYI A +A+G ++ RI+ HILPN L+PIIVQGTL IAT+I+ Sbjct: 185 TLAVRKLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLG 244 Query: 241 XQPPDPEWGKMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 QPP PEWG MLSD R ++ AP +FPGL+I++ VL FN+ GDGLRD LDP+ KN Sbjct: 245 AQPPIPEWGAMLSDGRNYMYDAPHVALFPGLAIVVVVLAFNIFGDGLRDALDPKSKN 301 >FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 289 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 124/284 (43%), Positives = 176/284 (61%), Gaps = 2/284 (0%) Query: 16 DKVSGPWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYG--FKEQELVNRLKAPS 73 +K W + ++ R+N+ AMLGL Y +Q L RL P+ Sbjct: 6 NKKQSQWAEVFRMLRKNRMAMLGLIILIILVLLALFADVIANYDTIVIKQNLAERLMPPN 65 Query: 74 AAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILAGFYGKWIDMLISR 133 HW GTD+ GRD+F R+I+GAR+SL VG A+ S++ G LG ++G++G ID +I R Sbjct: 66 GKHWLGTDEFGRDIFARLIHGARVSLKVGILAISISVVVGGILGAISGYFGGVIDNVIMR 125 Query: 134 LFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAKVLSLKSEEYITAA 193 + DI LA PS GPS+ N + +I++ +P + R+VRA VLS++ +E+I AA Sbjct: 126 VVDIFLAVPSILLAIAIVSALGPSMLNLMISISVSYVPNFARIVRASVLSIRDQEFIEAA 185 Query: 194 RAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXXXQPPDPEWGKMLS 253 +AIG +N+RI++ HI+PNSL P+IVQGTLG+A AI+ QPP PEWG MLS Sbjct: 186 KAIGASNSRIIMKHIIPNSLAPVIVQGTLGVAGAILSTAGLSFIGLGIQPPAPEWGSMLS 245 Query: 254 DSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 RQ+++ A W FPG++IM+T+L NL+GDGLRD LDPR+K Sbjct: 246 GGRQYLRYAWWVTTFPGVAIMITILSLNLLGDGLRDALDPRLKQ 289 >PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 287 Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/273 (43%), Positives = 163/273 (59%) Query: 22 WRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGFKEQELVNRLKAPSAAHWFGTD 81 W W F++NK M+GL Y EQ L +RLK P +WFGTD Sbjct: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKPPCEKYWFGTD 71 Query: 82 DLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILAGFYGKWIDMLISRLFDILLAF 141 + GRD+F+RI+YG+RI+L VG + S G LG+++G++G +D +I R DI+ AF Sbjct: 72 EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAF 131 Query: 142 PSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAKVLSLKSEEYITAARAIGMTNT 201 P+ GP L NA+ AIA+V +Y R+VRA+ LS+K E +I AARAIG ++ Sbjct: 132 PALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191 Query: 202 RILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXXXQPPDPEWGKMLSDSRQFIQK 261 RIL ++ILPN ++ I+V T I +AII QPP P+WG MLS +R ++ + Sbjct: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTR 251 Query: 262 APWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPR 294 APW +FPGL+IM VLGFN +GDGLRD + P Sbjct: 252 APWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284 >STM3628 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 300 Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 1 MGQVSMNVTPQSVPADKVSGPWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGF 60 M QV+ N + PA P R+ W F+RNK A++GL Y Sbjct: 1 MSQVTEN-NVNAAPAPMT--PLREFWHYFKRNKGAVVGLAYVLIVILIAVFANFIAPYNP 57 Query: 61 KEQELVNRLKAP-------SAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAG 113 EQ + L AP S AH GTDD+GRD+ +R++YGAR+SL VG V+ S++ G Sbjct: 58 AEQ-FRDALLAPPVWQEGGSWAHILGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMG 116 Query: 114 TFLGILAGFYGKWIDMLISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTY 173 LG++AG++G +D +I R+ DI+LA PS GPS+ NA A+ V +P Y Sbjct: 117 IILGLVAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHY 176 Query: 174 GRLVRAKVLSLKSEEYITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXX 233 RL RA VL + +Y+TA+R G R + +I PN L P+IVQ +LG + AI++ Sbjct: 177 VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAA 236 Query: 234 XXXXXXXXQPPDPEWGKMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDP 293 QPP PEWG MLSD QF Q A W V FPGL+I+LTVL FNLMGDGLRD LDP Sbjct: 237 LGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDP 296 Query: 294 RMKN 297 ++K Sbjct: 297 KLKQ 300 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.141 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,568,828 Number of extensions: 612826 Number of successful extensions: 2623 Number of sequences better than 1.0e-05: 188 Number of HSP's gapped: 2443 Number of HSP's successfully gapped: 192 Length of query: 297 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 191 Effective length of database: 26,153,027 Effective search space: 4995228157 Effective search space used: 4995228157 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)