BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0011.p (220 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA3902 [P] COG4149 ABC-type molybdate transport system, permease... 124 1e-28 MA2281 [P] COG4149 ABC-type molybdate transport system, permease... 114 1e-25 MA1236 [P] COG4149 ABC-type molybdate transport system, permease... 114 2e-25 AGc1503 [O] COG0555 ABC-type sulfate transport system, permease ... 80 3e-15 BMEI1840 [O] COG0555 ABC-type sulfate transport system, permease... 76 4e-14 >MA3902 [P] COG4149 ABC-type molybdate transport system, permease component Length = 222 Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 95/181 (52%) Query: 29 LATLAAKAMAGRRFPGYSXXXXXXXXXXXXXXXXXXXXXXXILGRRSWIGKLYEQFTEHT 88 L L A +A R FPG +LG+ IG ++ + T Sbjct: 29 LGILIAYVLAKREFPGKGLADVMVTMPMVLPPTVTGYILVILLGKNGVIGSIFSKITGSG 88 Query: 89 ILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARAQGASELQVLAYVTLPLAGR 148 ILFTW PL+ +T A V++++E+A+R G +E + ++TLPLA + Sbjct: 89 ILFTWQAAAIAAFVVSLPLMVKTTTAAIGAVDRNVEEASRILGRNEFETALFITLPLAKK 148 Query: 149 SLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVAVDGGNMTLAWLWVCSIIAI 208 + AG VL FAR +GEFGAT+MVAGNIPG+T T+P +IY A GN LA L V ++ + Sbjct: 149 GIIAGCVLSFARAVGEFGATLMVAGNIPGKTSTMPLSIYGAYQTGNNELANLLVLILVVM 208 Query: 209 S 209 S Sbjct: 209 S 209 >MA2281 [P] COG4149 ABC-type molybdate transport system, permease component Length = 225 Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 87/149 (58%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 ++GR ++G++ F I+FTW PL+ T KA E V++++E AA Sbjct: 70 LVGRNGFLGQMILNFLGTGIMFTWQAAVIAAYTVSLPLMVYTAKAAIEAVDREIEYAAYI 129 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 G SEL+ +TLP+A + + AG +L FAR +GEFGAT+M+AGNIPG+T T+ +IY A Sbjct: 130 LGKSELETALQITLPIAKKGILAGLILSFARAMGEFGATLMLAGNIPGKTNTMSISIYSA 189 Query: 190 VDGGNMTLAWLWVCSIIAISALMLMFVNR 218 GN LA + V ++ +S L + R Sbjct: 190 FQAGNNKLAQVLVLILVFMSLLTIALTGR 218 >MA1236 [P] COG4149 ABC-type molybdate transport system, permease component Length = 225 Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 87/149 (58%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 ++GR ++G++ F I+FTW PL+ T KA E V++++E AA Sbjct: 70 LVGRNGFLGQMILNFLGTGIMFTWQAAVIAAYTVSLPLMVYTAKAAIEAVDREIEYAAYI 129 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 G SEL+ +TLP+A + + AG +L FAR +GEFGAT+M+AGNIPG+T T+ +IY A Sbjct: 130 LGKSELETALQITLPIAKKGILAGLILSFARAMGEFGATLMLAGNIPGKTNTMSISIYSA 189 Query: 190 VDGGNMTLAWLWVCSIIAISALMLMFVNR 218 GN LA + V ++ +S L + R Sbjct: 190 FQAGNNELAQVLVLILVFMSLLTIALTGR 218 >AGc1503 [O] COG0555 ABC-type sulfate transport system, permease component Length = 370 Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 11/145 (7%), Positives = 25/145 (17%), Gaps = 1/145 (0%) Query: 73 RRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARAQGA 132 + + G R ++ Sbjct: 130 NDNRPDGFDPSYAFG-KADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQG 188 Query: 133 SELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVAVDG 192 + V + + AG+V L + + VDG Sbjct: 189 AARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDG 248 Query: 193 GNMTLAWLWVCSIIAISALMLMFVN 217 ++ L + + Sbjct: 249 VLWHNRSYIFFREADVAGLDMGPIA 273 >BMEI1840 [O] COG0555 ABC-type sulfate transport system, permease component Length = 288 Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 1/142 (0%) Query: 76 WIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARAQGASEL 135 WIG L + I FT P V RTV+ E + +++E+AA GAS Sbjct: 134 WIGGLLSPYGIR-IAFTRMGIVIALIFIGLPFVVRTVQPIIEEISREVEEAAATLGASRF 192 Query: 136 QVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVAVDGGNM 195 Q + V LP ++ G+ L FARG+GE+G+ I +AGN P +++ P I + ++ + Sbjct: 193 QTIWRVLLPGLQPAIITGFALAFARGIGEYGSVIFIAGNTPYKSEIAPLLIVIKLEEYDY 252 Query: 196 TLAWLWVCSIIAISALMLMFVN 217 A ++A+S ML+F+N Sbjct: 253 AGATALATVMLALSFAMLLFIN 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,668,543 Number of extensions: 451716 Number of successful extensions: 1547 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 1559 Number of HSP's successfully gapped: 29 Length of query: 220 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 118 Effective length of database: 26,614,363 Effective search space: 3140494834 Effective search space used: 3140494834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 114 (48.5 bits)