BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0006.p
         (331 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0252 [P] COG1910 Periplasmic molybdate-binding protein/domain      271   1e-72
CAC2020_2 [P] COG1910 Periplasmic molybdate-binding protein/domain    137   3e-32
PAE3465_2 [P] COG1910 Periplasmic molybdate-binding protein/domain    110   3e-24

>CAC0252 [P] COG1910 Periplasmic molybdate-binding protein/domain
          Length = 319

 Score =  271 bits (693), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 136/328 (41%), Positives = 201/328 (61%), Gaps = 11/328 (3%)

Query: 3   ENTSYTTEEIARLLKISKLKVYDLIKKGELPSYRVGKQMRVDLSDLEAYKQHSRSGISGS 62
           EN + T  ++A++L+ISK  VY+LIK+G+L  YRVGK++R+D  D+E YK   ++     
Sbjct: 2   ENKTLTPLDVAKILRISKNTVYELIKRGDLNCYRVGKKIRIDSKDVELYKHKCKTNTK-- 59

Query: 63  IPPVSAPAETPLFIPPSXXXXXXXXXXXXXGKAATDNVVITGQDMSLDLLATHLERSETS 122
                AP         +             G     + +I GQD+ LD+L+ +L+   + 
Sbjct: 60  ----KAPNSLQ-----NTRKNINENFLQSNGNIPNGSFIICGQDILLDILSRYLQIHPSG 110

Query: 123 FRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHMLTRS 182
              LRSY GS   L+ +Y G+  I + HL DGDSG+YN+PY+RRL+ G   I++++  R+
Sbjct: 111 TTALRSYVGSYSGLLGLYFGKIQIATAHLWDGDSGDYNIPYVRRLVPGIHTIIINLAFRT 170

Query: 183 AGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQLRLHGIPASQISGYAVEE 242
            GFYV KGNP+ I  W D ++  + ++NRERG G R+LLDE LRL  I  ++I+GY+ E 
Sbjct: 171 MGFYVAKGNPKNITGWEDFRRDDLTMVNRERGCGTRILLDEHLRLLNIDGNKINGYSRES 230

Query: 243 NSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIRTVLD 302
            SHLAIA  ++R  AD+GIG EK    +  +DFIP+ +ERYDLV+ K    +   + ++D
Sbjct: 231 LSHLAIASIISRNGADIGIGNEKTGLQVANIDFIPIQRERYDLVIRKDDIEKPPFKAIID 290

Query: 303 ILRSAAFQNELSSIHGYDLSETGTVIYE 330
           IL+S  F++EL  I GYDL++TGT I E
Sbjct: 291 ILQSETFKSELMGIGGYDLTQTGTTIAE 318


>CAC2020_2 [P] COG1910 Periplasmic molybdate-binding protein/domain
          Length = 229

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 130/226 (57%), Gaps = 1/226 (0%)

Query: 102 ITGQDMSLDLLATHLERSETSFRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNL 161
           I   D+ LD+++  L   E  +    ++ GS+  ++A+  GE+ I   HLLD   G YN+
Sbjct: 1   IGSHDIILDIVSDLLHVKEDKYFLSSAHVGSMGGIMALKSGETHIAPIHLLDMKDGTYNI 60

Query: 162 PYIRRLLVGFSYIVVHMLTRSAGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLL 221
            YI++ L   +  ++  + R  G  V KGNP  ++S  D+ +   R +NR+RGAG R+LL
Sbjct: 61  SYIKKYLCDKNIALIKGVKRIQGLMVPKGNPLNLKSIEDISKFRRRFVNRQRGAGTRLLL 120

Query: 222 DEQLRLHGIPASQISGYAVEENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQE 281
           D  L+   I +  I+GY  EE +H+A+A  VA G+AD G+G   AAK+++ +DFI +  E
Sbjct: 121 DYNLKKLNISSKDINGYEREEFTHIAVAAVVAAGDADCGLGVYSAAKLMN-LDFIEIGNE 179

Query: 282 RYDLVMLKKPGHETLIRTVLDILRSAAFQNELSSIHGYDLSETGTV 327
            YD  + K+     +++  +++++S  F+ EL  I GY+    G++
Sbjct: 180 EYDFAIPKEFLKMDVVKKFIEVIQSNEFKRELDKIGGYNYENIGSI 225


>PAE3465_2 [P] COG1910 Periplasmic molybdate-binding protein/domain
          Length = 224

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 20/211 (9%)

Query: 129 YAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHMLTRSAGFYVQ 188
           Y GS+  L+++  GE+D   TH+LD ++G YN+P ++RL +  +  V+ +  R  G  +Q
Sbjct: 24  YVGSMGGLMSIKRGEADFAGTHILDLETGVYNVPVVQRLGIKGA-AVIGLYRREQGLIIQ 82

Query: 189 KGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQL-----RLHGIPASQ----ISGYA 239
           +GNP+GI+   DL +  +  +NR RG G R LLD  L     RL G P  +    I GY 
Sbjct: 83  RGNPKGIKGVEDLLRDDVVYVNRPRGTGTRALLDIHLSKLAQRL-GTPFEELIRKIRGYT 141

Query: 240 VEENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIRT 299
            E  +H A+A  VA+G ADVG+G   AA++  G+DFIPL  E YDLV+        ++  
Sbjct: 142 YEVKTHTAVAAAVAQGRADVGMGVRYAAELY-GLDFIPLGWEEYDLVV-----RVDVLDK 195

Query: 300 VLDILRSAAFQNELSSIHGYDLSETGTVIYE 330
           V +I+R  A +N       Y++S  G V +E
Sbjct: 196 VFEIVRE-ALENLPRGYEKYEMS--GRVKWE 223


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 23,844,336
Number of extensions: 936784
Number of successful extensions: 1806
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1802
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 224
Effective length of database: 26,037,693
Effective search space: 5832443232
Effective search space used: 5832443232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)