BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0037.p (326 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0093 [K] COG0583 Transcriptional regulator 63 8e-10 lin2250 [K] COG0583 Transcriptional regulator 59 8e-09 AGc1597 [K] COG0583 Transcriptional regulator 58 3e-08 BS_ycgK [K] COG0583 Transcriptional regulator 57 5e-08 L0216 [K] COG0583 Transcriptional regulator 55 1e-07 >CAC0093 [K] COG0583 Transcriptional regulator Length = 290 Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 36 IEAFLAIVRTESISKAAELLHLSQATVSYRLKTLEQEMGGLLVERRKGAPKISLTPKGEN 95 ++ F+A+V +S +KAA +++SQ VS + LE+ G L+ER I +T G+ Sbjct: 5 LKTFIAVVDNKSFTKAANSINISQPGVSLHIANLEKYFGTKLIERSNKQRTILITSTGKI 64 Query: 96 FFSIAERWEALWRETQ------ILQASGXXXXXXXXXXXXXXHFVLPPVYRMLNQYTPSI 149 + A++ +L ET+ SG F+LP + + P++ Sbjct: 65 LYKRAKQILSLLNETKEELNNYTYSPSG---TLKLGSSMTIGEFILPKILGDFIKEYPNV 121 Query: 150 RLQIRTQHTQEAFDSIERREMDVAFVVREIVSPSVTVKPFFTEEMVLL 197 ++++ ++T+ +D + ++DVA + + + +K F+ + MV++ Sbjct: 122 KIEVTIENTKHIYDKFKNYDIDVALIEGNVPLENYMLKNFYKDTMVVV 169 >lin2250 [K] COG0583 Transcriptional regulator Length = 284 Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 10/186 (5%) Query: 34 PGIEAFLAIVRTESISKAAELLHLSQATVSYRLKTLEQEMGGLLVERRKGAPKISLTPKG 93 + ++ +V +S +KAAE LH+SQ VS +LK LE+ L+ R+ A K LT G Sbjct: 3 EALRTYIRVVELQSFTKAAEELHISQPAVSLQLKKLEELYETELIYRQ--AKKFILTATG 60 Query: 94 ENFFSIAERWEALWRETQ---ILQASGXXXXXXXXXXXXXXHFVLPPVYRMLNQYTPSIR 150 E + A++ E L+++ + L + LP V + P I Sbjct: 61 EILYHRAKQLEGLYKQVEDEISLYHHHLKGRLRIGASFTIGEYYLPEVIAKFHALYPDIT 120 Query: 151 LQIRTQHTQEAFDSIERREMDVAFVVREIVSPSVTVKPFFTEEMVLLRLAVPGRQAGDTV 210 +++ ++T + D +E ++D + ++ + + F +EM ++ GR G Sbjct: 121 IELIIENTAKIADKVELLQVDTGLIEGQVSKKDLEISAFSDDEMCIV-----GRADGSHT 175 Query: 211 EMEELA 216 E+E+ A Sbjct: 176 EIEQGA 181 >AGc1597 [K] COG0583 Transcriptional regulator Length = 370 Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 12/209 (5%), Positives = 34/209 (16%), Gaps = 15/209 (7%) Query: 36 IEAFLAIVRTESISKAAELLHLSQATVSYRLKTLEQEMGGLLVER--RKGAPKISLTPKG 93 + L+ +R + L + VS ++ R + P Sbjct: 30 MATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNS----VPFR 85 Query: 94 ENFFSIAERWE---ALWRETQILQASGXXXXXXXXXXXXXXHFVLPPVYRMLNQYTPSIR 150 + + + + Sbjct: 86 ISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGK 145 Query: 151 LQIRTQHTQEAFDSIERREMDVAFVVREIVSPSVTVKPFFTEEMVLL--RLAVPGRQAGD 208 +I+ + + V + + L R Sbjct: 146 ADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRI--- 202 Query: 209 TVEMEELAAEHEVFINWNREFQFRHDQWW 237 T + + + + Sbjct: 203 TYAAKAGHVFSPIGRLLLDRGEL-DPKTI 230 >BS_ycgK [K] COG0583 Transcriptional regulator Length = 133 Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 0/165 (0%), Positives = 0/165 (0%), Gaps = 10/165 (6%) Query: 42 IVRTESISKAAELLHLSQATVSYRLKTLEQEMGGLLVERRKGAPKISLTPKGENFFSIAE 101 ++ + + A +++ + + + E Sbjct: 12 LLALLTSTSFAAGKNVNVEFRKGHSSAQYSGEIKGYDYDTYTF--YAKKGQKVHVSISNE 69 Query: 102 ----RWEALWRETQILQASGXXXXXXXXXXXXXXHFVLPPVYRMLNQYTPSIRLQIRTQH 157 + + S + + + + Sbjct: 70 GADTYLFGPGIDDS-VDLSRYSPELDSHGQYSLPASGKYELRVLQTRNDARKNKTKKYNV 128 Query: 158 TQEAFDSIERREMDVAFVVREIVSPSVTVKPFFTEEMVLLRLAVP 202 Sbjct: 129 --- 170 >L0216 [K] COG0583 Transcriptional regulator Length = 273 Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 25/171 (14%) Query: 36 IEAFLAIVRTESISKAAELLHLSQATVSYRLKTLEQEMGGLLVERRKGAPKISLTPKGEN 95 +E F + + +SIS+AAE L++SQ VS ++K LE G L+E K I LT G Sbjct: 6 LEIFYHVAKFQSISRAAEALYISQPAVSSQIKKLESAYGVHLIE--KNGQGIQLTAPGIQ 63 Query: 96 FFSIAERW--------EALWRETQILQASGXXXXXXXXXXXXXXHFVLPPVYRMLNQYTP 147 + I + E+L + + +L+ SG +FV+P ++ + T Sbjct: 64 LYEIIRSFFENAIVSAESLLKNSSVLRISG---------NFLMTNFVIPQIF---DHETN 111 Query: 148 SIRLQIRTQHTQEAFDSIERREMDVAFVVRE---IVSPSVTVKPFFTEEMV 195 L I++ + A ++ D+A + ++S ++VK F +E++ Sbjct: 112 QANLIIKSTSSFNALTELKNGYCDLALISASSQPVLSADISVKKIFDDEII 162 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,343,250 Number of extensions: 800873 Number of successful extensions: 3245 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 3271 Number of HSP's successfully gapped: 21 Length of query: 326 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 219 Effective length of database: 26,037,693 Effective search space: 5702254767 Effective search space used: 5702254767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)