BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0034.p (227 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like... 211 9e-55 kdpE [TK] COG0745 Response regulators consisting of a CheY-like ... 211 9e-55 ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like... 211 9e-55 ECs0722 [TK] COG0745 Response regulators consisting of a CheY-li... 211 9e-55 STM0702 [TK] COG0745 Response regulators consisting of a CheY-li... 208 6e-54 >ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + T LE G + + AET + +LEA + +P+L+ILDLGLPD DG++ I+ Sbjct: 7 VEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDS--D 118 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LRR + D Sbjct: 67 LRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATAAPD 126 Query: 119 KLLKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEI 178 L+K + ++ +D AA + GEEE+HLTP E++LL +L N GKVLT +L+++ Sbjct: 127 PLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 179 WGSPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 WG V+ LR++M LR+K+E+ P + + T GIGYR + Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRFM 224 >kdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + T LE G + AET + +LEA + +P+L+ILDLGLPD DG++ I+ Sbjct: 7 VEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDS--D 118 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LRR + D Sbjct: 67 LRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPD 126 Query: 119 KLLKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEI 178 L+K + ++ +D AA + GEEE+HLTP E++LL +L N GKVLT +L+++ Sbjct: 127 PLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 179 WGSPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 WG V+ LR++M LR+K+E+ P + ++ T GIGYR + Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFM 224 Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + T LE G + + AET + +LEA + +P+L+ILDLGLPD DG++ I+ Sbjct: 7 VEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDS--D 118 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LRR + D Sbjct: 67 LRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATAAPD 126 Query: 119 KLLKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEI 178 L+K + ++ +D AA + GEEE+HLTP E++LL +L N GKVLT +L+++ Sbjct: 127 PLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 179 WGSPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 WG V+ LR++M LR+K+E+ P + + T GIGYR + Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRFM 224 >ECs0722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 9/224 (4%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + T LE G + + AET + +LEA + +P+L+ILDLGLPD DG++ I+ Sbjct: 7 VEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDS--D 118 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LRR + D Sbjct: 67 LRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATAAPD 126 Query: 119 KLLKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEI 178 L+K + ++ +D AA + GEEE+HLTP E++LL +L N GKVLT +L+++ Sbjct: 127 PLVKFS------DVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 180 Query: 179 WGSPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 WG V+ LR++M LR+K+E+ P + + T GIGYR + Sbjct: 181 WGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYRFM 224 >STM0702 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 150/222 (67%), Gaps = 5/222 (2%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VED++ IR+ + LE G + + AET + +LEA + +P+L+ILDLGLPD DG+D I+ Sbjct: 7 VEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIDFIRD 66 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 +R WS +P+IV+SARSE+ DKI ALDAGADDYL+KPF + EL ARLRV+LR R+ + Sbjct: 67 LRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR--RHAASPC 124 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 F + +D AA + G+EEIHLTP E++LL +L N GKVLT +L+++WG Sbjct: 125 ADPIVRF--SGVTVDLAARLIHRGDEEIHLTPIEFRLLAVLLNNTGKVLTQRQLLNQVWG 182 Query: 181 SPTVDIPS-LRVFMATLRKKIEKTPVQFKYIQTHIGIGYRML 221 V+ LR++M LR+K+E+ P + ++ T GIGYR + Sbjct: 183 PNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETGIGYRFM 224 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,068,517 Number of extensions: 662110 Number of successful extensions: 2754 Number of sequences better than 1.0e-05: 489 Number of HSP's gapped: 2297 Number of HSP's successfully gapped: 491 Length of query: 227 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 124 Effective length of database: 26,499,029 Effective search space: 3285879596 Effective search space used: 3285879596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)