BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0026.p (234 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0755 [TK] COG0745 Response regulators consisting of a CheY-lik... 238 8e-63 BH0271 [TK] COG0745 Response regulators consisting of a CheY-lik... 214 8e-56 CAC0371 [TK] COG0745 Response regulators consisting of a CheY-li... 209 4e-54 CAC0224 [TK] COG0745 Response regulators consisting of a CheY-li... 208 5e-54 SP1633 [TK] COG0745 Response regulators consisting of a CheY-lik... 195 5e-50 >BH0755 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 238 bits (606), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 112/230 (48%), Positives = 156/230 (67%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M++I ++EDD K+A ++ KKYGY+ DF + Q+F RP+LVLLD+NLP++DG Sbjct: 1 MYKIFVIEDDRKMASIICQYFKKYGYEAQYAIDFDMIKQDFLDYRPDLVLLDINLPAFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 +YWCRQ+R +S P++F+SAR EMDQ+ A+ENGGDDYITKPFH ++LAK+ LRR+Y Sbjct: 61 FYWCRQLRRLSNLPIIFLSARASEMDQVYAIENGGDDYITKPFHLEVLLAKVKGVLRRSY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 G+YA + +LE +GL Y +R + V + KE L+ L E + SR+ LL Sbjct: 121 GDYAIPLNQNILEVDGLFFYRDRNTIELNGQKVECSPKEFRLLICLAEHVENIVSRDKLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNISWA 232 E +WD FVD+NTLNVNI R R++ +++GI DA+ TVRG GY L SW Sbjct: 181 EAIWDEIDFVDDNTLNVNIRRGRRRLEDIGITDAIQTVRGQGYCLKKSWG 230 >BH0271 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 102/227 (44%), Positives = 146/227 (64%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M+RI+IVED+ I L ++KYGY+ +EDF +VL F++ P LV++D+NLP +DG Sbjct: 1 MYRILIVEDERSITHTLKKRLEKYGYECHTIEDFKRVLDVFQETEPHLVIMDINLPYFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 YYW R+IR ISTCP++ +SAR E+DQ+ +ENG DD+ITKPF +VLAKI+ +RR Y Sbjct: 61 YYWSRKIRQISTCPIMILSARMSELDQVYGIENGADDFITKPFVMDVVLAKINGQIRRTY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 GEYA E +++ L + + L + LT KE L E +P V +R+ LL Sbjct: 121 GEYAKNTERRIVQLGNTTLNLDTVRLSTPKQEEVLTVKELQLCTMFFEDFPNVVTRQRLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNI 229 +WD + FV+ENTL VNI R+RKK + + + T+RG GY+L + Sbjct: 181 SVIWDEEGFVEENTLTVNIKRLRKKLENVQSSLELKTIRGIGYQLTV 227 >CAC0371 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 209 bits (531), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 105/227 (46%), Positives = 151/227 (66%), Gaps = 1/227 (0%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M++I+I+EDD K+A+ +K+Y Y+V K+ DF +V +EFE+I PELVLLDVNLP YDG Sbjct: 1 MYKILIIEDDKKLAEFTEEYLKRYNYEVFKIFDFKKVEEEFEKINPELVLLDVNLPYYDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 + CR R S P++F+SAR E++QI LE G DDYITKPF ++LAK+ + +RR Y Sbjct: 61 FNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFELLLAKVQASIRRTY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 GEY+ E+ L G+++ ++ Y V LT+ E LI L++ +V +RE LL Sbjct: 121 GEYSEDNSEV-LTVSGIIVDKNTFKMTYKDKEVELTKNELKLITKLLKNINKVVTREELL 179 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNI 229 E+LWD +FVD+NTL VN+ R++ K E+GI++ V RG GY L+ Sbjct: 180 EELWDESSFVDDNTLTVNVTRIKNKLSEVGIKNVVKNKRGIGYYLDF 226 >CAC0224 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 223 Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 155/223 (69%), Gaps = 3/223 (1%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M+RIMI+ED+ KI +++ +++K+ ++ VEDF + ++F +++P LVL+D+NLP DG Sbjct: 1 MYRIMIIEDEEKIRNIIKKSLEKWSFEAHAVEDFNDIFEQFVKVKPNLVLMDINLPVCDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 +YWC +IRNIS PV+F+S+R MD +MA+ GGDDYITKPF I++AKI++ LRR Y Sbjct: 61 FYWCSKIRNISKVPVIFLSSRSSNMDVVMAVNMGGDDYITKPFSIEILMAKINAILRRTY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 ++ E +E + +++ + + Y + + LT+ E +I LM+ + + SRE ++ Sbjct: 121 S--YSETEMDTIEFKDVIISLKNNTVYYNENSIELTKNEFKIIYVLMKNHDSIVSREKIM 178 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGY 225 ++LW ++F+D+NTL VNI R+RKK +E+G+ D + T++G GY Sbjct: 179 QELWQDESFIDDNTLTVNINRLRKKLKEIGV-DFIKTIKGQGY 220 >SP1633 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 150/225 (66%), Gaps = 3/225 (1%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M +I+++EDD I + + ++G++VV VEDF +VL F Q P LVL+D+ LP ++G Sbjct: 1 MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 Y+WC++IR IS P++F+S+RD MD +MA+ G DD++TKPF ++LAK+ LRR+Y Sbjct: 61 YHWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 E+ R+E +LE G++L + ++L Y V+ LT+ E ++ L E + +R+ L+ Sbjct: 121 -EFG--RDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLM 177 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRL 227 +LW+ F+D+NTL+VN+AR+RKK +E G+ + T +G GY L Sbjct: 178 RELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGL 222 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,268,001 Number of extensions: 687655 Number of successful extensions: 3575 Number of sequences better than 1.0e-05: 345 Number of HSP's gapped: 3284 Number of HSP's successfully gapped: 345 Length of query: 234 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 131 Effective length of database: 26,499,029 Effective search space: 3471372799 Effective search space used: 3471372799 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)