BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0024.p (255 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport sys... 323 2e-88 BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport sys... 320 1e-87 BH0753 [V] COG1136 ABC-type antimicrobial peptide transport syst... 313 2e-85 BH0273 [V] COG1136 ABC-type antimicrobial peptide transport syst... 297 1e-80 CAC0226 [V] COG1136 ABC-type antimicrobial peptide transport sys... 269 3e-72 >BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 11/254 (4%), Positives = 39/254 (15%) Query: 1 MLEVRQVSKIYEGNVAYRALTDIDLTIEAGEFVGIMGPSGSGKTTLLNMIATVDSPTTGS 60 +R + EG++ D + + + + Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 61 IMIDGKDTGKLDKNELAVFRRRELGFVFQDFNLLNTLTVEENMVLPLTLDGTRVSEMKQK 120 + + LD F ++ T + + + Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 121 AQEIAGKLGISAIMKKRTYEISGGQAQRTAIARAMIHSPKLLLADEPTGNLDSKAAKDVM 180 + + + ++ + R + + Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 181 DLLEAINREQSTTMLLVTHDAVAASYCHRVVFIKDGRFYTEIHSGNNRQSFFQKIIDTLS 240 ++ A + + + Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 Query: 241 LLGGYSNDVPPVRI 254 R Sbjct: 244 YGTCMPMLNLTRRK 257 >BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 15/247 (6%), Positives = 48/247 (19%), Gaps = 3/247 (1%) Query: 1 MLEVRQVSKIY---EGNVAYRALTDIDLTIEAGEFVGIMGPSGSGKTTLLNMIATVDSPT 57 + + I+ + + + M +G + A S + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 58 TGSIMIDGKDTGKLDKNELAVFRRRELGFVFQDFNLLNTLTVEENMVLPLTLDGTRVSEM 117 ++ + + + ++ + F L + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 118 KQKAQEIAGKLGISAIMKKRTYEISGGQAQRTAIARAMIHSPKLLLADEPTGNLDSKAAK 177 + L + ++ + L + PT Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 178 DVMDLLEAINREQSTTMLLVTHDAVAASYCHRVVFIKDGRFYTEIHSGNNRQSFFQKIID 237 + + + ++ + D + G Y + I+ Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 Query: 238 TLSLLGG 244 Sbjct: 243 VYGTCMP 249 >BH0753 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 15/257 (5%), Positives = 45/257 (17%), Gaps = 6/257 (2%) Query: 1 MLEVRQVSKIY---EGNVAYRALTDIDLTIEAGEFVGIMGPSGSGKTTLLNMIATVDSPT 57 + +L ++ ++ + I Sbjct: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 58 TGSIMIDGKDTGKLDKNELAVFRRRELGFVFQDFNLLNTLTVEENMVLPLTLDGTRVSEM 117 + + + ++ F+ + + Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 118 KQKAQEIAGKLGISAIMKKRTYEISGGQAQRTAIARAMIHSPKLLLADEPTGNLDSKAAK 177 + E + T S Q + M + Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 178 DVMDLLEAINREQSTTMLLVTHDAVAASYCHRVVFIKDGRFYTEIHSGNNRQSFFQKIID 237 + + + EQ A Y + + + + Q+ I Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 238 TLSLLGGYSNDV---PP 251 T+ ++ Sbjct: 242 TVYGTCMPMLNLTRRKG 258 >BH0273 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 297 bits (761), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 15/244 (6%), Positives = 45/244 (18%) Query: 1 MLEVRQVSKIYEGNVAYRALTDIDLTIEAGEFVGIMGPSGSGKTTLLNMIATVDSPTTGS 60 + + + +L ++ ++ + I + Sbjct: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 Query: 61 IMIDGKDTGKLDKNELAVFRRRELGFVFQDFNLLNTLTVEENMVLPLTLDGTRVSEMKQK 120 + + ++ F+ + + + Sbjct: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 Query: 121 AQEIAGKLGISAIMKKRTYEISGGQAQRTAIARAMIHSPKLLLADEPTGNLDSKAAKDVM 180 E + T S Q + M + + Sbjct: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 Query: 181 DLLEAINREQSTTMLLVTHDAVAASYCHRVVFIKDGRFYTEIHSGNNRQSFFQKIIDTLS 240 + + EQ A Y + + + + Q+ I T+ Sbjct: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVY 244 Query: 241 LLGG 244 Sbjct: 245 GTCM 248 >CAC0226 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 14/253 (5%), Positives = 49/253 (19%), Gaps = 4/253 (1%) Query: 1 MLEVRQVSKIYE---GNVAYRALTDIDLTIEAGEFVGIMGPSGSGKTTLLNMIATVDSPT 57 + + I+ + + + M +G + A S + Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 58 TGSIMIDGKDTGKLDKNELAVFRRRELGFVFQDFNLLNTLTVEENMVLPLTLDGTRVSEM 117 ++ + + + ++ + F L + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 118 KQKAQEIAGKLGISAIMKKRTYEISGGQAQRTAIARAMIHSPKLLLADEPTGNLDSKAAK 177 + L + ++ + L + PT Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 178 DVMDLLEAINREQSTTMLLVTHDAVAASYCHRVVFIKDGRFYTEIHSGN-NRQSFFQKII 236 + + + ++ + D + G Y + Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 Query: 237 DTLSLLGGYSNDV 249 + + + Sbjct: 243 VYGTCMPMLNLTR 255 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,568,964 Number of extensions: 692957 Number of successful extensions: 18176 Number of sequences better than 1.0e-05: 2198 Number of HSP's gapped: 15431 Number of HSP's successfully gapped: 2458 Length of query: 255 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 151 Effective length of database: 26,383,695 Effective search space: 3983937945 Effective search space used: 3983937945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)