BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0149.0019.p
         (547 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-bin...    53   1e-06

>lin0153_2 [R] COG3979 Uncharacterized protein contain chitin-binding domain
           type 3
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 22/115 (19%)

Query: 404 ESPTWPGYAAVTASDVTTNSVTLNWTEAQDNTAVTGYRIIWGDSVSMSVHGSVTDAVYGT 463
           E+PT P   ++ +S+VT  SVTL+WT + DN AV GY++    +   SV G+       T
Sbjct: 1   EAPTVP--KSLASSNVTDKSVTLSWTASTDNKAVAGYKVYRNGTEVGSVSGT-------T 51

Query: 464 VTDSVYATATSAVITGLNADTPYTFIVYARDAAGNWSV--NGLEVRMRTASMPSA 516
            TDS           GL A T YT+ V A DAAGN+S   + L V    A+ P A
Sbjct: 52  FTDS-----------GLTAKTAYTYTVKAYDAAGNFSAASSALTVTTLDAATPPA 95


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 42,366,135
Number of extensions: 1833825
Number of successful extensions: 2588
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 38,378,431
Length adjustment: 111
Effective length of query: 436
Effective length of database: 25,576,357
Effective search space: 11151291652
Effective search space used: 11151291652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 118 (50.1 bits)