BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0017.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 254 1e-67 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 224 8e-59 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 221 1e-57 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 215 7e-56 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 215 7e-56 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 254 bits (649), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 123/288 (42%), Positives = 191/288 (66%) Query: 7 LYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESEMFRNAF 66 L++LL+PA +F Y P+ GI +AF DY GF+ S+WVG ++F +FE + + Sbjct: 30 LHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVI 89 Query: 67 LNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGGIISLLL 126 NTL+IS+ KM+ G + PI++AL LNE+ + K+T+QT +YLP F+SWV+ GGI+ +L Sbjct: 90 WNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVL 149 Query: 127 SPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAGLNPEVY 186 SP+ G+++ + FG P + L +FRT +VI+D KE G+ I+++AAI +NP +Y Sbjct: 150 SPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLY 209 Query: 187 EAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVFEVGDIL 246 EAA +DGA R+K+ LH+TLP + IIV+ L +G +++AG DQ+ NLYNP+V++ GDI+ Sbjct: 210 EAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDII 269 Query: 247 DTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 DTY+YR+ + + S A + K LI VL+++ +A K + IF Sbjct: 270 DTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 224 bits (572), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 184/293 (62%), Gaps = 2/293 (0%) Query: 3 KYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESEMF 62 + K LY++ LP AWV VF+Y PL G ++AF ++ F +WVG ++F LF+ F Sbjct: 26 QQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRF 85 Query: 63 RNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGGII 122 NTL +S+ ++ GF PI+ A+ LNE+R + FK+T+QT YLP FVSWVV GI+ Sbjct: 86 YLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIV 145 Query: 123 SLLLSPETGVISSIIEFFG--GKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAG 180 + +LS + G+++ ++ FG +P +A+ +F I+ ++D KEMGW +II++AA+AG Sbjct: 146 TKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAG 205 Query: 181 LNPEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVF 240 ++P++YEAA +DGA+R++++ H+TLPGI TI+VI IL +G +M+ G ++ L NP+V Sbjct: 206 IDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVV 265 Query: 241 EVGDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGI 293 + ++LD Y G+ S A + ++ +L+ L N I + + + Sbjct: 266 DYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 182/294 (61%) Query: 1 VWKYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESE 60 +++ K LY+++LP + +F Y+P+ G+ IAF DY G + S+WVGFK+F LF Sbjct: 32 IFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEP 91 Query: 61 MFRNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGG 120 F NTL++ LY ++ F PI+LA+ LNEIR + FK+ +QT +Y+P F+SWV+ Sbjct: 92 TFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVS 151 Query: 121 IISLLLSPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAG 180 + +L + + GVI+ II GK L +FR + ++ +E GW IIY AAIA Sbjct: 152 LTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAA 211 Query: 181 LNPEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVF 240 ++P +YEAA MDGA RF+++ H+TLP I S I+V+ IL++G ++ G + V + N M Sbjct: 212 IDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNR 271 Query: 241 EVGDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 EV +I DTY+Y G+++ S + A K ++G ++V+L N +A K + G++ Sbjct: 272 EVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 177/296 (59%), Gaps = 2/296 (0%) Query: 1 VWKYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESE 60 ++ K L ++ LP W+ +F Y+PL G SIAF D+ + DW GFK+F LF Sbjct: 42 CYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDP 101 Query: 61 MFRNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGG 120 F NTL +SL ++ GF++ I LA+ LNE+R + FK+ +QT Y+P F+SWVV G Sbjct: 102 RFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAG 161 Query: 121 IISLLLSPETGVISSIIEFFG--GKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAI 178 ++S LS E G+I+ ++ G +P L YF I+ +D K +GW IIY+AAI Sbjct: 162 LVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAI 221 Query: 179 AGLNPEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPM 238 ++ E YEAA +DGATR +++ ++TLPG+ I+++ I+ +G ++ +G + L NPM Sbjct: 222 TMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPM 281 Query: 239 VFEVGDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 + + LD ++ R GI N SLA AA + K ++ F+ + NHIA ++ ++ +F Sbjct: 282 NMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 174/275 (63%) Query: 20 VFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESEMFRNAFLNTLLISLYKMLS 79 +F YLP+ G+ IAF DY+ GF S+WVGF YF+ F + F NTL+++ +L Sbjct: 44 IFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLF 103 Query: 80 GFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGGIISLLLSPETGVISSIIEF 139 F +P++LAL LNE+R +K+ +QT +Y+P FVSW + I + + +TGVI+ +I Sbjct: 104 AFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIMS 163 Query: 140 FGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAGLNPEVYEAATMDGATRFKK 199 G+ L++ +FR ++V+ KE GW I+++AA+A ++ E YEAA MDGA RF++ Sbjct: 164 LTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRR 223 Query: 200 MLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVFEVGDILDTYIYRIGIEQFN 259 M H+TLP I STIIV+ ILR+G+ ++ G +QV + N + V DI DTY+Y +GI Q Sbjct: 224 MWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGA 283 Query: 260 LSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 S + A + K ++G +L+ N+IA K + G+F Sbjct: 284 YSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.144 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,796,654 Number of extensions: 860902 Number of successful extensions: 4314 Number of sequences better than 1.0e-05: 135 Number of HSP's gapped: 4242 Number of HSP's successfully gapped: 135 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)