BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0013.p (268 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy1556 [T] COG4753 Response regulator containing CheY-like rece... 137 3e-32 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 135 6e-32 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 122 4e-28 SPy1062 [T] COG4753 Response regulator containing CheY-like rece... 122 5e-28 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 98 1e-20 >SPy1556 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 246 Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/266 (31%), Positives = 138/266 (51%), Gaps = 27/266 (10%) Query: 1 MYKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAW--LEREVPDLILTDIGM 58 MY LLI ED +VR ++ +D+ I + ENG+ LAW ++E D++LTDI M Sbjct: 1 MYSLLIVEDEYLVRQGIRSLVDFSQFKIDRVNEAENGQ--LAWDLFQKEPYDIVLTDINM 58 Query: 59 PVMNGLQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAH 118 P +NG+QL E + P + L+G +F +A A+KL DY+LKP ++E +L Sbjct: 59 PKLNGIQLAELIKQESPQTHLVFLTGYDDFNYALSALKLGADDYLLKPFSKADVEDMLGK 118 Query: 119 AVGELKLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFT 178 +L+L ++ + + EQ KE V I E+ Sbjct: 119 LRKKLELSKKTETIQELVEQPQKE-----------------------VSAIAMAIHERLA 155 Query: 179 RRDLSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYEICD 238 DL+L +A +G S YL++L+K+ G ++ R+++A LL +KIYEI + Sbjct: 156 DSDLTLKSLAQQLGFSPNYLSVLIKKELGMPFQDYLVQERLKKAKLLLLTSNLKIYEIAE 215 Query: 239 QIGYADQDHFRESFKKQFGLTPTKYR 264 Q+G+ D ++F + FK+ G+TP++Y+ Sbjct: 216 QVGFEDMNYFSQRFKQLVGVTPSQYK 241 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/263 (30%), Positives = 145/263 (55%), Gaps = 25/263 (9%) Query: 2 YKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPVM 61 Y +LI ED +VR L ++ + D+ ++G ENG + ++++VPD+ILTDI MP + Sbjct: 3 YTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHL 62 Query: 62 NGLQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAVG 121 NG+QL V ++P + + L+G +F++A A+KL V DY+LKP ++IE +L G Sbjct: 63 NGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEML----G 118 Query: 122 ELKLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTRRD 181 ++K + +K+ EK L D+ + + N+ ++ I+ Sbjct: 119 KIKQKLDKE-----------EKEEQLQDLLTNR-FEGNMAQK---------IQSHLADSQ 157 Query: 182 LSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYEICDQIG 241 SL +A +G S YL+ L+K+ G ++ R+++A LL +KIYEI +++G Sbjct: 158 FSLKSLASDLGFSPTYLSSLIKKELGLPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVG 217 Query: 242 YADQDHFRESFKKQFGLTPTKYR 264 + D ++F + FK+ G+TP +++ Sbjct: 218 FEDMNYFTQRFKQIAGVTPRQFK 240 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 138/262 (52%), Gaps = 13/262 (4%) Query: 4 LLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPVMNG 63 +LI +D R LK ++ S + + + +E + L E DLI+TDI MP M+G Sbjct: 6 VLIVDDEPRSRRGLKRTLEAWSPKLLNVQTAASAKEAITRLNEETIDLIITDIRMPEMSG 65 Query: 64 LQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAVGEL 123 L L++A+ +P CI++S SEFE+A A++L V Y+LKP+ E++ + A L Sbjct: 66 LHLVKALQEQNPKPVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKLIEAVESA---L 122 Query: 124 KLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTRRDLS 183 ++++E+ R E+ EK+ DA E + + +A+ YI ++ + Sbjct: 123 QMKKEQDR-FGQVEKVWDEKI--------DAIEKERLSSSDSIHEALHYIDAHLDQK-IG 172 Query: 184 LAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYEICDQIGYA 243 L +VA SV L+ YL+ L KE T T ++ + R++ A LL I +I ++ GY Sbjct: 173 LKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRPISDIAEKCGYQ 232 Query: 244 DQDHFRESFKKQFGLTPTKYRN 265 +F + FK+ G+TPT+YR Sbjct: 233 TAKYFIKIFKEHEGMTPTQYRK 254 >SPy1062 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 262 Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 140/266 (52%), Gaps = 20/266 (7%) Query: 1 MYKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPV 60 MYKL+I ED ++R L+YAID+ +LDI V+G ++G+E ++ PD++LTDI MP+ Sbjct: 1 MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPI 60 Query: 61 MNGLQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAV 120 M + E + IILSG ++F +AR AI VL+++ KPI+ + L + Sbjct: 61 MTAFDMFE--VTKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLQTII 118 Query: 121 GELKLQREKQRGISMAEQA-VKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTR 179 ++ EKQ+G + A V LP + D P+ +V+ + ++ F Sbjct: 119 AKI----EKQKGSNQKTDACVYIPLPQMTDQIPE-----------VVKDILEWVHAHFQD 163 Query: 180 RDLSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLL-KDPLIKIYEICD 238 + +S + +A +G S+ Y+ +K+ ++ I R+ +A +L+ ++P + +YEI Sbjct: 164 K-ISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQ 222 Query: 239 QIGYADQDHFRESFKKQFGLTPTKYR 264 +G D +F FKK G T ++ Sbjct: 223 AVGIYDYRYFDRVFKKYLGQTVKAFK 248 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 76/117 (64%), Gaps = 1/117 (0%) Query: 1 MYKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPV 60 MYK+L+A+D VR LK I+W+ V +NGE+ ++ PDL++TDI MPV Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60 Query: 61 MNGLQLIEAVMAS-HPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVL 116 +GLQLI+ V + + + II+SG ++F +A++A++ +D++LKPID +E+E L Sbjct: 61 FDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAAL 117 Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Query: 172 YIKEQFTRRDLSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLI 231 YI+ + ++SL +A ++ Y+ L K+ G + ++ LRM EA +LL+ + Sbjct: 429 YIENHY-HENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDM 487 Query: 232 KIYEICDQIGYADQDHFRESFKKQFGLTPTKYRNLFL 268 ++YE+ +++G+ D+F F+K +TPT+YRN L Sbjct: 488 RVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNKLL 524 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,646,639 Number of extensions: 827556 Number of successful extensions: 4216 Number of sequences better than 1.0e-05: 958 Number of HSP's gapped: 4389 Number of HSP's successfully gapped: 966 Length of query: 268 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 163 Effective length of database: 26,268,361 Effective search space: 4281742843 Effective search space used: 4281742843 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)