BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0026.p (224 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA0017 [TK] COG0745 Response regulators consisting of a CheY-lik... 140 1e-33 all4503 [TK] COG0745 Response regulators consisting of a CheY-li... 138 6e-33 CAC0289 [TK] COG0745 Response regulators consisting of a CheY-li... 135 5e-32 BS_ykoG [TK] COG0745 Response regulators consisting of a CheY-li... 135 6e-32 slr0081 [TK] COG0745 Response regulators consisting of a CheY-li... 134 1e-31 >SA0017 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 235 Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 15/231 (6%) Query: 1 MSVTLLYVEDDREIGSAVSADLREREYAV--RWLXXXXXXXXXXXXCQLVILDVMLPGLD 58 M+ ++ V+D++ I + +L++ Y V + +V+LD+MLPG D Sbjct: 3 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 62 Query: 59 GFTVGQRLKRAYPNLPILMLSARTSIDDKLQGLEF-ADDYLTKPFHPDELAARIEVLLRR 117 G V + +++ Y +PI+ML+A+ S DK+ GLE ADDY+TKPF EL AR++ LRR Sbjct: 63 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 121 Query: 118 --------TGAVLSIPLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYLLRHLGQI 169 TG V + + +K +++Y I G++I LT ++F++F YL +H+GQ+ Sbjct: 122 HYSQPAQDTGNVTN-EITIKDIVIYPDAYSI--KKRGEDIELTHREFELFHYLSKHMGQV 178 Query: 170 LTKEQIYEAVWGESYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGY 220 +T+E + + VWG Y +T+ V IR LREK+E DP+ PE I T RG+GY Sbjct: 179 MTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 229 >all4503 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 253 Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 116/180 (64%), Gaps = 8/180 (4%) Query: 47 LVILDVMLPGLDGFTVGQRLKRAYPNLPILMLSARTSIDDKLQGLEF-ADDYLTKPFHPD 105 LVILD+MLP ++G + + L+ +PILMLSA+ S D++ GLE ADDYLTKPF Sbjct: 75 LVILDLMLPQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMR 134 Query: 106 ELAARIEVLLRRTGAVLSIP----LKLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSY 161 EL AR LLRR ++++P LK K + + + R++ G+E+ L+ K+F++ Sbjct: 135 ELVARCRALLRRQ-RLITLPQLPVLKFKDVTLNPQECRVL--VRGQEVNLSPKEFRLLEL 191 Query: 162 LLRHLGQILTKEQIYEAVWGESYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYR 221 + + ++ ++EQ+ + VWG ++ KT+ VHIR+LREKLE DP+ PE I TVRG GYR Sbjct: 192 FMSYARRVWSREQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYR 251 >CAC0289 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 235 Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 117/185 (63%), Gaps = 10/185 (5%) Query: 46 QLVILDVMLPGLDGFTVGQRLKRAYPNLPILMLSARTSIDDKLQGLEF-ADDYLTKPFHP 104 +++ILD+MLP +DGF V +++ R + ++PI+ LSA++ DK+ GL ADDY+TKPF P Sbjct: 53 EIIILDIMLPDIDGFEVFRQI-RNFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSP 111 Query: 105 DELAARIEVLLRRTGAVLSI------PLKLKHLMVYEGDNRIIEAASGKEILLTGKQFQI 158 E+A R++ L+R V +K +H + II+ + K +L K+ + Sbjct: 112 KEVALRVKAHLKRIEMVKKSLTNRENIIKTEHFTIDFEKGEIIK--NDKSTILRAKELLL 169 Query: 159 FSYLLRHLGQILTKEQIYEAVWGESYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGI 218 YL+ + IL+KE+I AVW + Y+ D T+MVHIR LR+KLE DP+ P+ I TV+G+ Sbjct: 170 LKYLVENKNIILSKEKIVNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGL 229 Query: 219 GYRVR 223 GY+++ Sbjct: 230 GYKLK 234 >BS_ykoG [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 13/228 (5%) Query: 5 LLYVEDDREIGSAVSADLREREYAV--RWLXXXXXXXXXXXXCQLVILDVMLPGLDGFTV 62 +L VED+ +I + +L Y+V + LV+LDVMLPGL G V Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 63 GQRLKRAYPNLPILMLSARTSIDDKLQGLEF-ADDYLTKPFHPDELAARIEVLLRRTGAV 121 +RL++ P+++L+AR SI DK+ GL+ A+DY+TKPF +EL ARI LR+ G Sbjct: 66 LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125 Query: 122 LSIPLKLKHLMVYEGDNRIIEAA-----SGKEILLTGKQFQIFSYLLRHLGQILTKEQIY 176 + + Y+ D R+ E KE+ LT ++F + Y+L+H Q+LT+EQI Sbjct: 126 TE---DIGTFLTYD-DLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQIL 181 Query: 177 EAVWGESYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYRVRA 224 +VWG YI + V+IRY+R+KL+ P ++I T+RG+GY ++ Sbjct: 182 SSVWGFDYIGDTNVVDVYIRYIRKKLDY-PYEKQLIHTIRGVGYAIKG 228 >slr0081 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 262 Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/179 (41%), Positives = 114/179 (63%), Gaps = 6/179 (3%) Query: 47 LVILDVMLPGLDGFTVGQRLKRAYPNLPILMLSARTSIDDKLQGLEF-ADDYLTKPFHPD 105 L+ILD+MLP ++G V + L+ N PIL++SA+ S +K+ GLE ADDY+TKPF Sbjct: 84 LIILDIMLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLK 143 Query: 106 ELAARIEVLLRRTGAVLS--IPL-KLKHLMVYEGDNRIIEAASGKEILLTGKQFQIFSYL 162 EL AR ++RR G + P K + L++Y + R++ G+E+ L K+F++ Sbjct: 144 ELVARCRAMIRRQGLAGNNIAPFRKFRDLVLYPQECRVL--MRGEEVSLAPKEFRLLELF 201 Query: 163 LRHLGQILTKEQIYEAVWGESYIEGDKTLMVHIRYLREKLELDPAAPEIIETVRGIGYR 221 + + ++ ++EQ+ E +WG ++ KT+ VHIR+LREKLE DP+ PE + TVRG GYR Sbjct: 202 MSYPRRVWSREQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYR 260 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.141 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,826,654 Number of extensions: 588407 Number of successful extensions: 2330 Number of sequences better than 1.0e-05: 274 Number of HSP's gapped: 1771 Number of HSP's successfully gapped: 275 Length of query: 224 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 121 Effective length of database: 26,499,029 Effective search space: 3206382509 Effective search space used: 3206382509 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)