BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0010.p (271 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1503 [O] COG0555 ABC-type sulfate transport system, permease ... 279 4e-75 RSc1345 [O] COG0555 ABC-type sulfate transport system, permease ... 269 4e-72 BMEI1840 [O] COG0555 ABC-type sulfate transport system, permease... 265 8e-71 BMEI0674 [O] COG0555 ABC-type sulfate transport system, permease... 257 2e-68 STM2443 [O] COG0555 ABC-type sulfate transport system, permease ... 237 2e-62 >AGc1503 [O] COG0555 ABC-type sulfate transport system, permease component Length = 370 Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 8/267 (2%), Positives = 31/267 (11%) Query: 2 RRKVLPGFGLTMGYXXXXXXXXXXXXXXXXIFNSTGLSWAKFWDIATDPRVLASYRVSXX 61 + + + R + Sbjct: 15 LPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQAR 74 Query: 62 XXXXXXXXXXXXXXXXXWVLVRYEFPGKRIFDALIDLPFALPTAVAGVSLTALYSQNGWI 121 F + + + Sbjct: 75 QFFETNSVPFRISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRP 134 Query: 122 GSMLEPLGLKIAFTPLGITLALMFIGIPFVVRTVQPVLEDLDRDMEEASATLGAGRWRTF 181 A +R + ++ + F Sbjct: 135 DGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVF 194 Query: 182 RSIVIPELIPPLLTGFALAFARGIGEYGSVVFISGNMPMRTEIAPLLIMSKLEQFDYAGA 241 I + G + + + +++ + Sbjct: 195 PDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNR 254 Query: 242 TAVAXXXXXXXXXXXXVINTLQRWARK 268 + + I + Sbjct: 255 SYIFFREADVAGLDMGPIAAAKVPLVA 281 >RSc1345 [O] COG0555 ABC-type sulfate transport system, permease component Length = 304 Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/270 (57%), Positives = 189/270 (70%), Gaps = 3/270 (1%) Query: 2 RRK---VLPGFGLTMGYXXXXXXXXXXXXXXXXIFNSTGLSWAKFWDIATDPRVLASYRV 58 RRK VLPGFGL +G+ + + ++W FW T PRV+ASY++ Sbjct: 12 RRKPANVLPGFGLALGFSLLYLALIVLIPLSATVLKTVSMTWDAFWSTVTAPRVVASYQL 71 Query: 59 SXXXXXXXXXXXXXXXXXXXWVLVRYEFPGKRIFDALIDLPFALPTAVAGVSLTALYSQN 118 + WVLVRY FPGKR+ DAL+DLPFALPTAVAG++LTALY+ N Sbjct: 72 TFGASLLAAALNLVFGLIVAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALTALYAPN 131 Query: 119 GWIGSMLEPLGLKIAFTPLGITLALMFIGIPFVVRTVQPVLEDLDRDMEEASATLGAGRW 178 GWIGS LEPLGLK+AFTPLGI +AL FIG+PFVVRTVQPVLEDL+ ++EEA+A+LGA RW Sbjct: 132 GWIGSRLEPLGLKVAFTPLGIVVALTFIGLPFVVRTVQPVLEDLEAELEEAAASLGATRW 191 Query: 179 RTFRSIVIPELIPPLLTGFALAFARGIGEYGSVVFISGNMPMRTEIAPLLIMSKLEQFDY 238 +TF +++P L+P LLTGFALAFAR GEYGSV+FI+GNMPM +EI PL+I SKLEQFDY Sbjct: 192 QTFLRVILPTLLPTLLTGFALAFARATGEYGSVIFIAGNMPMISEITPLMIYSKLEQFDY 251 Query: 239 AGATAVAXXXXXXXXXXXXVINTLQRWARK 268 AGATA+A VIN LQ W R+ Sbjct: 252 AGATAIAVVMLAISFALLLVINLLQAWTRR 281 >BMEI1840 [O] COG0555 ABC-type sulfate transport system, permease component Length = 288 Score = 265 bits (676), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 131/265 (49%), Positives = 175/265 (66%) Query: 4 KVLPGFGLTMGYXXXXXXXXXXXXXXXXIFNSTGLSWAKFWDIATDPRVLASYRVSXXXX 63 V+PGFGLT G+ + S+ + A FW I TD R L + S Sbjct: 18 SVIPGFGLTFGFSVAYLTLIILIPLAALVLRSSDVGLAGFWRIVTDERTLKALETSFGTA 77 Query: 64 XXXXXXXXXXXXXXXWVLVRYEFPGKRIFDALIDLPFALPTAVAGVSLTALYSQNGWIGS 123 WVLVRY F G+R DA++D+PFALPTAVAG+SL A+Y+ NGWIG Sbjct: 78 FIAALVNVVFGVILAWVLVRYRFAGRRFVDAIVDIPFALPTAVAGISLAAIYAPNGWIGG 137 Query: 124 MLEPLGLKIAFTPLGITLALMFIGIPFVVRTVQPVLEDLDRDMEEASATLGAGRWRTFRS 183 +L P G++IAFT +GI +AL+FIG+PFVVRTVQP++E++ R++EEA+ATLGA R++T Sbjct: 138 LLSPYGIRIAFTRMGIVIALIFIGLPFVVRTVQPIIEEISREVEEAAATLGASRFQTIWR 197 Query: 184 IVIPELIPPLLTGFALAFARGIGEYGSVVFISGNMPMRTEIAPLLIMSKLEQFDYAGATA 243 +++P L P ++TGFALAFARGIGEYGSV+FI+GN P ++EIAPLLI+ KLE++DYAGATA Sbjct: 198 VLLPGLQPAIITGFALAFARGIGEYGSVIFIAGNTPYKSEIAPLLIVIKLEEYDYAGATA 257 Query: 244 VAXXXXXXXXXXXXVINTLQRWARK 268 +A IN +Q R+ Sbjct: 258 LATVMLALSFAMLLFINLIQTRIRR 282 >BMEI0674 [O] COG0555 ABC-type sulfate transport system, permease component Length = 298 Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/262 (46%), Positives = 163/262 (62%) Query: 2 RRKVLPGFGLTMGYXXXXXXXXXXXXXXXXIFNSTGLSWAKFWDIATDPRVLASYRVSXX 61 R VLPGFGLT+G I + L W FW+I T R LA+YR++ Sbjct: 28 RNSVLPGFGLTLGCTLVYLTVIVALPLLAMILKTASLGWGDFWNIVTSERALATYRITVS 87 Query: 62 XXXXXXXXXXXXXXXXXWVLVRYEFPGKRIFDALIDLPFALPTAVAGVSLTALYSQNGWI 121 WVL RY+FPGKR+ DA +DLPFALPTA+AG++L L++QNGW Sbjct: 88 AAAVATILNGLFGLLLAWVLTRYDFPGKRLIDAAVDLPFALPTAIAGLALVTLFAQNGWF 147 Query: 122 GSMLEPLGLKIAFTPLGITLALMFIGIPFVVRTVQPVLEDLDRDMEEASATLGAGRWRTF 181 G +LEPLG+K+A+ PLGI +A+ F IPFVVRTVQPVLED+ D+EEA+ +LGA W+TF Sbjct: 148 GRVLEPLGIKVAYAPLGIMIAMFFTSIPFVVRTVQPVLEDMSADVEEAARSLGATSWQTF 207 Query: 182 RSIVIPELIPPLLTGFALAFARGIGEYGSVVFISGNMPMRTEIAPLLIMSKLEQFDYAGA 241 I P + P L G +L+FAR +GE+GS+VFISGN+P +TE+ LL+ +L+++DY A Sbjct: 208 THITWPTIFPAFLAGASLSFARSLGEFGSIVFISGNLPFQTEVTALLVFIRLDEYDYPAA 267 Query: 242 TAVAXXXXXXXXXXXXVINTLQ 263 A+A V N +Q Sbjct: 268 AALAFVMLVMAFFMLLVTNLIQ 289 >STM2443 [O] COG0555 ABC-type sulfate transport system, permease component Length = 277 Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/267 (43%), Positives = 170/267 (63%), Gaps = 1/267 (0%) Query: 3 RKVLPGFGLTMGYXXXXXXXXXXXXXXXXIFNSTGLSWAKFWDIATDPRVLASYRVSXXX 62 R+VLPGF L++G + + +SWA++WD+ T+P+V+A+Y+V+ Sbjct: 7 RRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWDVVTNPQVVAAYKVTLLA 66 Query: 63 XXXXXXXXXXXXXXXXWVLVRYEFPGKRIFDALIDLPFALPTAVAGVSLTALYSQNGWIG 122 W+L RY FPG+ + DAL+DLPFALPTAVAG++L +L+S NG+ G Sbjct: 67 AFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGFYG 126 Query: 123 SMLEPLGLKIAFTPLGITLALMFIGIPFVVRTVQPVLEDLDRDMEEASATLGAGRWRTFR 182 L +K+ +T LGI +A+ F IPFVVRTVQPVLE+L + EEA+ TLGA R ++FR Sbjct: 127 QFLAQFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAQTLGATRLQSFR 186 Query: 183 SIVIPELIPPLLTGFALAFARGIGEYGSVVFISGNMPMRTEIAPLLIMSKLEQFDYAGAT 242 +V+PEL P L+ G AL+F R +GE+G+V+FI+GN+ +TE+ L+I +L++FDY A+ Sbjct: 187 KVVLPELSPALIAGVALSFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAAS 246 Query: 243 AVAXXXXXXXXXXXXVINTLQ-RWARK 268 A+A INTLQ R+ R+ Sbjct: 247 AIASVILAASLLLLFSINTLQSRFGRR 273 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,110,921 Number of extensions: 673969 Number of successful extensions: 3962 Number of sequences better than 1.0e-05: 180 Number of HSP's gapped: 3894 Number of HSP's successfully gapped: 195 Length of query: 271 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 166 Effective length of database: 26,268,361 Effective search space: 4360547926 Effective search space used: 4360547926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)