BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0147.0007.p (223 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2062 [TK] COG0745 Response regulators consisting of a CheY-li... 183 2e-46 BS_resD [TK] COG0745 Response regulators consisting of a CheY-li... 181 8e-46 BS_yclJ [TK] COG0745 Response regulators consisting of a CheY-li... 173 2e-43 SA1323 [TK] COG0745 Response regulators consisting of a CheY-lik... 171 7e-43 Cgl0731 [TK] COG0745 Response regulators consisting of a CheY-li... 170 1e-42 >lin2062 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 238 Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 151/233 (64%), Gaps = 12/233 (5%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 +VVDD+ +R+L + L E + E +DG +A + L+++ ++I+LD+MMPG DG E+C Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIEVC 67 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 R+LRE P++M+TAK E ++V+GF +G DDY+ KPF P E+V+RVKA+L+R + ++ Sbjct: 68 RELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQSSE 127 Query: 121 H--------IVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDML 172 I+ + +D +++V G E L KE++LLY LA P ++F R+ L Sbjct: 128 EAAGGTPGDIITFPHLKIDNEAHRVIVD--GKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 173 IRDIWGYAFNGDERTVDTHVKRLRDKFEQYAEDFR--IVTMRGMGYRLEVYHD 223 ++++W Y F GD RT+DTHVKRLR+K +ED IVT+ G+GY+ EV D Sbjct: 186 LKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPED 238 >BS_resD [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 240 Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 12/230 (5%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 +VVDD+ +R+L + L E + E +G EA L + DLI+LD+MMPG DG E+C Sbjct: 10 LVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIEVC 69 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKR------ 114 R++RE P++M+TAK E ++V+GF GTDDY+ KPF P E+V+RVKALL+R Sbjct: 70 RQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQTSY 129 Query: 115 --YRIATSHIVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDML 172 T +++ + +D +++V + G E +L K +ELLY LA P +++ R+ L Sbjct: 130 FNANTPTKNVLVFSHLSIDHDAHRV--TADGTEVSLTPKVYELLYFLAKTPDKVYDREKL 187 Query: 173 IRDIWGYAFNGDERTVDTHVKRLRDKFEQYAEDF--RIVTMRGMGYRLEV 220 ++++W Y F GD RTVDTHVKRLR+K + + + +IVT+ G+GY+ EV Sbjct: 188 LKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >BS_yclJ [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 227 Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 7/224 (3%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 ++++D+V V + + EG + DGLE + + + DLIILDIM+P MDG +C Sbjct: 4 LMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTIC 63 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYR---- 116 RK+RE P++M+TAK D+V GF +G DDY+TKPF P+ +V R+KA+++RY+ Sbjct: 64 RKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGK 123 Query: 117 -IATSHIVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDMLIRD 175 + +++ ++K + +V + E P KEF+LLY L P Q+F+R+ L+ Sbjct: 124 AVIDEDMIETECFTINKKTREVLLNGEPVENLTP-KEFDLLYYLVQNPRQVFSREQLLEQ 182 Query: 176 IWGYAFNGDERTVDTHVKRLRDKFEQYAEDFRIVTMRGMGYRLE 219 +WGY F GDERTVD H+KRLR K + F + T+ G+GY+ + Sbjct: 183 VWGYQFYGDERTVDVHIKRLRKKLASEDKPF-LYTVWGVGYKFD 225 >SA1323 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 241 Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 145/230 (63%), Gaps = 12/230 (5%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 ++VDD+ +R+L + L E ++ E ++G EA++ + ++ I+LD+M+P MDG ++ Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 KLRE P++M+TAK E ++V+GF G DDY+ KPF P E+V+RVKALL+R + T Sbjct: 66 TKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTV 125 Query: 121 H--------IVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDML 172 +++ + +D +++V +D E L KE+ELL LA P ++F R+ L Sbjct: 126 EQSEPHARDVIEFKHLEIDNDAHRV-LAD-NQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 173 IRDIWGYAFNGDERTVDTHVKRLRDKFEQYAEDFR--IVTMRGMGYRLEV 220 ++++W Y F GD RTVDTHVKRLR+K + + + I T+ G+GY+ EV Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >Cgl0731 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 226 Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 137/218 (62%), Gaps = 3/218 (1%) Query: 1 MVVDDDVFVRQLAGLLLRDEGMDVVEKTDGLEAWDYYLHHSVDLIILDIMMPGMDGWELC 60 +VVDDD + ++ ++L EG D V TDG A + DLI+LD+M+PGM+G ++C Sbjct: 6 LVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMNGIDIC 65 Query: 61 RKLREAGDKPMLMVTAKKESLDKVKGFRLGTDDYLTKPFDPMEMVMRVKALLKRYRIATS 120 R +R+ P++M+TAK +++D V G G DDY+ KPF E+V R++A L+ S Sbjct: 66 RLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVDEPS 125 Query: 121 HIVKLGRVILDKTSYQVHFSDTGGEWTLPLKEFELLYKLASYPGQIFTRDMLIRDIWGYA 180 I+++G + +D ++ V + G E +L EF+LL +LA P Q+FTR+ L+ +WGY Sbjct: 126 EIIEVGDLSIDVPAHTVKRN--GAEISLTPLEFDLLLELARKPQQVFTREELLGKVWGYR 183 Query: 181 FNGDERTVDTHVKRLRDKFEQYAEDFRIV-TMRGMGYR 217 D R V+ HV+RLR K E+ E+ +IV T+RG+GY+ Sbjct: 184 HASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,751,951 Number of extensions: 750711 Number of successful extensions: 2845 Number of sequences better than 1.0e-05: 423 Number of HSP's gapped: 2458 Number of HSP's successfully gapped: 425 Length of query: 223 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 121 Effective length of database: 26,614,363 Effective search space: 3220337923 Effective search space used: 3220337923 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 114 (48.5 bits)