BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0145.0001.p (988 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1027GM [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 270 8e-72 all1175_4 [T] COG2200 FOG: EAL domain 228 5e-59 all4225_2 [T] COG2200 FOG: EAL domain 223 8e-58 PA0575_4 [T] COG2200 FOG: EAL domain 220 7e-57 slr0359_4 [T] COG2200 FOG: EAL domain 219 1e-56 >AGl1027GM [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 274 Score = 270 bits (691), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 0/451 (0%), Positives = 0/451 (0%), Gaps = 14/451 (3%) Query: 540 EQYNKVVENQELLQASEEKYRLLAYNDVLSGLPNRLS----LSEELTDFIEKHPGGQAAL 595 S + + L D + Sbjct: 198 ALNLTPCFTPVASPQSNGMSEAFVKTLKRDYIRISALPDAQTALRLIDGWIE--DYNEIH 255 Query: 596 FFLDIDNFKYINDTMGHTFGDELLVKAGERLLELSDGRCRHFRFGGDEFVILIKEVDRYA 655 Sbjct: 256 - 314 Query: 656 EVIYYAESLVQGFSAPFELDASSVHISISIGIASYPENGTDAGELLKNADIAMYKAKEAG 715 Sbjct: 315 374 Query: 716 KGTYVVYGEEMQQHFDERMIVEHHLRNAIANNELSLQYQPLVDTGTGRIWGFEALIRWNN 775 Sbjct: 375 434 Query: 776 PVLGIVSPLSFITIAEDCRLIVPIGEWVLRKACRFMKELQAQGYE-GYHISVNISVVQLM 834 Sbjct: 435 ----- 489 Query: 835 LDDFTDMVLAVLEDTGLAPEYLELEITESIFMESFEAVSSKLEPLKQRGIGIALDDFGTG 894 Sbjct: 490 549 Query: 895 YSSLSYLKQLPITTLKIDKSFIDSI-DTPNNMSLASSIVTIGHDMGLNVTAEGVETQEQL 953 Sbjct: 550 609 Query: 954 AFLEQTSCDKIQGYFISRPIPQKEVAGWISG 984 Sbjct: 610 640 >all1175_4 [T] COG2200 FOG: EAL domain Length = 261 Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 166/254 (65%), Gaps = 1/254 (0%) Query: 732 ERMIVEHHLRNAIANNELSLQYQPLVDTGTGRIWGFEALIRWNNPVLGIVSPLSFITIAE 791 E + +E LR A+ EL + YQP V+ TG+I G EAL+RW +P +GIV+P FI IAE Sbjct: 1 ELLTLEKSLRYALEKQELKVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFIPIAE 60 Query: 792 DCRLIVPIGEWVLRKACRFMKELQAQGYEGYHISVNISVVQLMLDDFTDMVLAVLEDTGL 851 + LI+PIGEWVLR AC + Q G ++VN+S Q ++V A+L +TGL Sbjct: 61 ETGLIIPIGEWVLRTACMQNRAWQEAGLPPVQMAVNLSPKQFRQPTLLELVSAILAETGL 120 Query: 852 APEYLELEITESIFMESFEAVSSKLEPLKQRGIGIALDDFGTGYSSLSYLKQLPITTLKI 911 APE+LELEITES +E + S LE L+Q G+ IA+DDFGTG+SSLS L+ LP+ LKI Sbjct: 121 APEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPLHNLKI 180 Query: 912 DKSFIDSIDTPNNMS-LASSIVTIGHDMGLNVTAEGVETQEQLAFLEQTSCDKIQGYFIS 970 D SFI ++ T + ++ + +IVT+G +GL +TAEGVE QE+L FL+ +C +QG+ Sbjct: 181 DGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQGFLFH 240 Query: 971 RPIPQKEVAGWISG 984 +P+ ++ + G Sbjct: 241 KPLSAEKATEILQG 254 >all4225_2 [T] COG2200 FOG: EAL domain Length = 260 Score = 223 bits (569), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 107/248 (43%), Positives = 162/248 (65%), Gaps = 1/248 (0%) Query: 732 ERMIVEHHLRNAIANNELSLQYQPLVDTGTGRIWGFEALIRWNNPVLGIVSPLSFITIAE 791 ER+ +E+ L A+ NE+ + YQP++D T +I EAL+RW +P G+VSP FI IAE Sbjct: 1 ERLALENELHGALERNEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKFIPIAE 60 Query: 792 DCRLIVPIGEWVLRKACRFMKELQAQGYEGYHISVNISVVQLMLDDFTDMVLAVLEDTGL 851 LIV IGEWVLR AC + Q G +SVN+S Q + ++V +++++GL Sbjct: 61 ANGLIVEIGEWVLRTACLQNRTWQLAGLPPIRMSVNLSARQFEESNLVELVSEIIQESGL 120 Query: 852 APEYLELEITESIFMESFEAVSSKLEPLKQRGIGIALDDFGTGYSSLSYLKQLPITTLKI 911 P YLELE+TES M + + L+ L++ G+ +ALDDFGTGYSSL+YLK+ P+ LKI Sbjct: 121 HPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPVNMLKI 180 Query: 912 DKSFI-DSIDTPNNMSLASSIVTIGHDMGLNVTAEGVETQEQLAFLEQTSCDKIQGYFIS 970 D+SF+ D P++ ++ ++I+ + + L +TAEG+ETQ+QL++L++ C + QGY+ Sbjct: 181 DRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQGYYFG 240 Query: 971 RPIPQKEV 978 P P KE+ Sbjct: 241 IPAPAKEI 248 >PA0575_4 [T] COG2200 FOG: EAL domain Length = 267 Score = 220 bits (561), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 158/244 (64%), Gaps = 1/244 (0%) Query: 732 ERMIVEHHLRNAIANNELSLQYQPLVDTGTGRIWGFEALIRWNNPVLGIVSPLSFITIAE 791 ERM +E LR A+ +EL L YQP + +G + G EAL+RW +P+ G +SP FI +AE Sbjct: 1 ERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISPERFIPLAE 60 Query: 792 DCRLIVPIGEWVLRKACRFMKELQAQGYEGYHISVNISVVQLMLDDFTDMVLAVLEDTGL 851 DC LI+P+G+WVL AC+ M E Q +SVN++ QL + + +LE +GL Sbjct: 61 DCGLILPLGDWVLEHACQQMGEWQKLHAPFGPLSVNLAGAQLGQPQLIERLEQLLEQSGL 120 Query: 852 APEYLELEITESIFMESFEAVSSKLEPLKQRGIGIALDDFGTGYSSLSYLKQLPITTLKI 911 P L+LEITES M E + L LK+ G+ +A+DDFGTGYSSLSYLK+LP+ LKI Sbjct: 121 EPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDILKI 180 Query: 912 DKSFIDSI-DTPNNMSLASSIVTIGHDMGLNVTAEGVETQEQLAFLEQTSCDKIQGYFIS 970 DKSFI + D P++ ++ +I+ +G M L V AEGVET+ Q +FL C++IQG+ +S Sbjct: 181 DKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLS 240 Query: 971 RPIP 974 P+P Sbjct: 241 PPLP 244 >slr0359_4 [T] COG2200 FOG: EAL domain Length = 282 Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/259 (42%), Positives = 169/259 (65%), Gaps = 3/259 (1%) Query: 728 QHFDERMIVEHHLRNAIANNELSLQYQPLVDTGTGRIWGFEALIRWNNPVLGIVSPLSFI 787 H +R+ E+ LR AI EL L YQP+V TG++ G EAL+RW +P G++ P F+ Sbjct: 1 HHAVQRLQRENDLRRAIDRQELQLHYQPIVCLKTGQLQGVEALVRWQHPEEGLILPEEFV 60 Query: 788 TIAEDCRLIVPIGEWVLRKACRFMKELQAQGYEGYH--ISVNISVVQLMLDDFTDMVLAV 845 IAE+ LIVP+G+W+L +A R + EL+ + H +S+N+S QL V + Sbjct: 61 AIAEETGLIVPMGDWILWEASRQILELKQSFPQLSHLQVSINVSSRQLRDQRLLKTVDEI 120 Query: 846 LEDTGLAPEYLELEITESIFMESFEAVSSKLEPLKQRGIGIALDDFGTGYSSLSYLKQLP 905 L T LAP+ L+LEITES+ +++ + L+ L+QR I I+LDDFGTGYSSLSYL + P Sbjct: 121 LSSTNLAPQDLKLEITESLLIDNLNLAADVLKSLRQRNIQISLDDFGTGYSSLSYLHRFP 180 Query: 906 ITTLKIDKSFIDSIDTPN-NMSLASSIVTIGHDMGLNVTAEGVETQEQLAFLEQTSCDKI 964 I T+K+D+SF+++++ N N ++ +IVT+ H +GL+V AEG+ET+ L L CD Sbjct: 181 INTIKVDRSFVNTMEPNNQNTAIVHTIVTLAHTLGLDVIAEGIETERHLTQLHWLGCDAG 240 Query: 965 QGYFISRPIPQKEVAGWIS 983 QGY+ +RPIP +++ +++ Sbjct: 241 QGYYFARPIPSEDLLDFLT 259 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 73,635,467 Number of extensions: 3185277 Number of successful extensions: 8824 Number of sequences better than 1.0e-05: 277 Number of HSP's gapped: 8411 Number of HSP's successfully gapped: 281 Length of query: 988 Length of database: 38,378,431 Length adjustment: 116 Effective length of query: 872 Effective length of database: 24,999,687 Effective search space: 21799727064 Effective search space used: 21799727064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)