BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0137.0019.p (149 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1765 [P] COG2223 Nitrate/nitrite transporter 102 2e-22 aq_1333 [D] COG0037 Predicted ATPase of the PP-loop superfamily ... 63 1e-10 aq_1332 [MU] COG1538 Outer membrane protein 63 1e-10 aq_1335 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases 63 1e-10 aq_1331 [M] COG0845 Membrane-fusion protein 63 1e-10 >STM1765 [P] COG2223 Nitrate/nitrite transporter Length = 465 Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 9/139 (6%), Positives = 20/139 (14%), Gaps = 10/139 (7%) Query: 3 RRLAREIIVQSLYQMEMNDVESADAVEMLIAEAAEENESEHVITDEVELKAYVVEHVNGV 62 R + + A+ + V + Sbjct: 5 SAPERATGAVITEWRPEDPAFW---QQRGHRVASRNLWISVPCLL-------LAFCVWML 54 Query: 63 WEHKMAIDDMLEHYLKGWQMSRLSRVDRQILRLATFEMVFANDVPAKVAVNEAIDLAKHF 122 + + Q+ L+ + L F + Sbjct: 55 FSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGRRWTAFSTGILIV 114 Query: 123 GTEDSGKFVNGVLGKMIQE 141 G V Sbjct: 115 PCVWLGFAVQDTSTPFSTF 133 >aq_1333 [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control Length = 148 Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%) Query: 3 RRLAREIIVQSLYQMEMNDVESADAVEMLIAEAAEENESEHVITDEVELKAYVVEHVNGV 62 R+ AR+ LY+ ++ + + ++ E +N+ + Y + V+ Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAY---------EYAKKLVDTA 54 Query: 63 WEHKMAIDDMLEHYLKGWQMSRLSRVDRQILRLATFEMVF-ANDVPAKVAVNEAIDLAKH 121 H ID ++E +LKGW + RL V+R LRL E++F + P +V ++ +DL K Sbjct: 55 VRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKK 113 Query: 122 FGTEDSGKFVNGVLGKMIQ 140 + E +GKFVNGVL + + Sbjct: 114 YADEKAGKFVNGVLSAIYK 132 >aq_1332 [MU] COG1538 Outer membrane protein Length = 148 Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%) Query: 3 RRLAREIIVQSLYQMEMNDVESADAVEMLIAEAAEENESEHVITDEVELKAYVVEHVNGV 62 R+ AR+ LY+ ++ + + ++ E +N+ + Y + V+ Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAY---------EYAKKLVDTA 54 Query: 63 WEHKMAIDDMLEHYLKGWQMSRLSRVDRQILRLATFEMVF-ANDVPAKVAVNEAIDLAKH 121 H ID ++E +LKGW + RL V+R LRL E++F + P +V ++ +DL K Sbjct: 55 VRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKK 113 Query: 122 FGTEDSGKFVNGVLGKMIQ 140 + E +GKFVNGVL + + Sbjct: 114 YADEKAGKFVNGVLSAIYK 132 >aq_1335 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Length = 148 Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%) Query: 3 RRLAREIIVQSLYQMEMNDVESADAVEMLIAEAAEENESEHVITDEVELKAYVVEHVNGV 62 R+ AR+ LY+ ++ + + ++ E +N+ + Y + V+ Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAY---------EYAKKLVDTA 54 Query: 63 WEHKMAIDDMLEHYLKGWQMSRLSRVDRQILRLATFEMVF-ANDVPAKVAVNEAIDLAKH 121 H ID ++E +LKGW + RL V+R LRL E++F + P +V ++ +DL K Sbjct: 55 VRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKK 113 Query: 122 FGTEDSGKFVNGVLGKMIQ 140 + E +GKFVNGVL + + Sbjct: 114 YADEKAGKFVNGVLSAIYK 132 >aq_1331 [M] COG0845 Membrane-fusion protein Length = 148 Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 11/139 (7%) Query: 3 RRLAREIIVQSLYQMEMNDVESADAVEMLIAEAAEENESEHVITDEVELKAYVVEHVNGV 62 R+ AR+ LY+ ++ + + ++ E +N+ + Y + V+ Sbjct: 4 RKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAY---------EYAKKLVDTA 54 Query: 63 WEHKMAIDDMLEHYLKGWQMSRLSRVDRQILRLATFEMVF-ANDVPAKVAVNEAIDLAKH 121 H ID ++E +LKGW + RL V+R LRL E++F + P +V ++ +DL K Sbjct: 55 VRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFID-IVDLVKK 113 Query: 122 FGTEDSGKFVNGVLGKMIQ 140 + E +GKFVNGVL + + Sbjct: 114 YADEKAGKFVNGVLSAIYK 132 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 9,692,224 Number of extensions: 330325 Number of successful extensions: 795 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 800 Number of HSP's successfully gapped: 6 Length of query: 149 Length of database: 38,378,431 Length adjustment: 97 Effective length of query: 52 Effective length of database: 27,191,033 Effective search space: 1413933716 Effective search space used: 1413933716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)