BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0009.p (232 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0755 [TK] COG0745 Response regulators consisting of a CheY-lik... 240 1e-63 BH0271 [TK] COG0745 Response regulators consisting of a CheY-lik... 212 3e-55 CAC0371 [TK] COG0745 Response regulators consisting of a CheY-li... 209 3e-54 lin1856 [TK] COG0745 Response regulators consisting of a CheY-li... 208 5e-54 SA0614 [TK] COG0745 Response regulators consisting of a CheY-lik... 195 5e-50 >BH0755 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/229 (50%), Positives = 155/229 (67%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M+KIF+IEDDR + ++ Y K+GYE Q DF+ ++ +F + P LVLLD+NLP FDG Sbjct: 1 MYKIFVIEDDRKMASIICQYFKKYGYEAQYAIDFDMIKQDFLDYRPDLVLLDINLPAFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 +YWCRQ+R LS PI+F+SAR +MDQV A+ENG DDYITKPF E+ LAK+K LRR+Y Sbjct: 61 FYWCRQLRRLSNLPIIFLSARASEMDQVYAIENGGDDYITKPFHLEVLLAKVKGVLRRSY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G YA + L V GL +R + K++ S E ++L L + +V+RD+LL Sbjct: 121 GDYAIPLNQNILEVDGLFFYRDRNTIELNGQKVECSPKEFRLLICLAEHVENIVSRDKLL 180 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRLCENW 229 E IWD+ FVDDNTLNV + R R++L + I D +QTVRGQGY L ++W Sbjct: 181 EAIWDEIDFVDDNTLNVNIRRGRRRLEDIGITDAIQTVRGQGYCLKKSW 229 >BH0271 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 145/225 (64%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M++I I+ED+R + L+ L K+GYE + DF+ V F+ PHLV++D+NLP FDG Sbjct: 1 MYRILIVEDERSITHTLKKRLEKYGYECHTIEDFKRVLDVFQETEPHLVIMDINLPYFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 YYW R+IR +STCPI+ +SAR ++DQV +ENGADD+ITKPF ++ LAKI +RR Y Sbjct: 61 YYWSRKIRQISTCPIMILSARMSELDQVYGIENGADDFITKPFVMDVVLAKINGQIRRTY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G YA R + + L+++ + LS + L+ E ++ + VVTR RLL Sbjct: 121 GEYAKNTERRIVQLGNTTLNLDTVRLSTPKQEEVLTVKELQLCTMFFEDFPNVVTRQRLL 180 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRL 225 IWD++ FV++NTL V + R+RKKL + + L+T+RG GY+L Sbjct: 181 SVIWDEEGFVEENTLTVNIKRLRKKLENVQSSLELKTIRGIGYQL 225 >CAC0371 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 152/225 (67%), Gaps = 1/225 (0%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M+KI IIEDD+ L ++YL ++ YE + DF+ V EFE P LVLLDVNLP +DG Sbjct: 1 MYKILIIEDDKKLAEFTEEYLKRYNYEVFKIFDFKKVEEEFEKINPELVLLDVNLPYYDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 + CR R S PI+F+SAR +++Q+ LE GADDYITKPF +E+ LAK+++ +RR Y Sbjct: 61 FNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFELLLAKVQASIRRTY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 G Y+ +E LTV+G+++D ++ +++L+ E K++ +L++ VVTR+ LL Sbjct: 121 GEYSEDNSE-VLTVSGIIVDKNTFKMTYKDKEVELTKNELKLITKLLKNINKVVTREELL 179 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRL 225 E++WD+ +FVDDNTL V VTR++ KL+ + I + ++ RG GY L Sbjct: 180 EELWDESSFVDDNTLTVNVTRIKNKLSEVGIKNVVKNKRGIGYYL 224 >lin1856 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 149/225 (66%), Gaps = 1/225 (0%) Query: 1 MFKIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDG 60 M K++I+EDD + ++ +L K+G+E V DF + EF SF P LV+LDVNLP FDG Sbjct: 1 MVKVYIVEDDEVIRDTIRKHLSKWGFEIGVVDDFNNILQEFLSFEPQLVILDVNLPFFDG 60 Query: 61 YYWCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAY 120 +YWC QIR +S PI+F+S+R +MDQ+M + GAD YI KP D ++ +A+I + LRR Y Sbjct: 61 FYWCNQIREVSNVPIIFLSSRNSRMDQIMGMNMGADYYIEKPVDLDVLMARINALLRRTY 120 Query: 121 GSYAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLL 180 SYA + + L ++ L+ KI+L+ E IL ELM++ G++V+RD ++ Sbjct: 121 -SYADLEEANVMEHNNVFLHIDTNTLTHLEDKIELTKNEFLILYELMKQKGSIVSRDEIM 179 Query: 181 EKIWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGYRL 225 +W+D++FVDDNTL V V R+RKKLA + + + ++T +GQGY + Sbjct: 180 RALWEDESFVDDNTLTVNVVRIRKKLAEIGLDEFIKTKKGQGYMI 224 >SA0614 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 224 Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 143/221 (64%), Gaps = 2/221 (0%) Query: 3 KIFIIEDDRGLVMLLQDYLHKFGYETQAVHDFEAVRAEFESFAPHLVLLDVNLPKFDGYY 62 +I ++EDD L L+ L ++ + + DF V FESF P +V+LDV LPK+DG+Y Sbjct: 2 QILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFY 61 Query: 63 WCRQIRGLSTCPILFISAREGKMDQVMALENGADDYITKPFDYEIALAKIKSHLRRAYGS 122 WCR++R +S PILF+S+R+ MDQVM++E GADDY+ KPF + +AK+++ RR Y Sbjct: 62 WCRKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEF 121 Query: 123 YAGGGTERSLTVAGLMLDVERLVLSRGSAKIDLSHTEAKILDELMQKAGTVVTRDRLLEK 182 A +R+LT ++D+ + + +G I LS TE IL+ L+ K +V+RD ++ Sbjct: 122 TA--EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITA 179 Query: 183 IWDDQAFVDDNTLNVYVTRVRKKLAALDIADGLQTVRGQGY 223 +WDD+AFV DNTL V V R+RKKL+ + + ++T G+GY Sbjct: 180 LWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,433,998 Number of extensions: 685092 Number of successful extensions: 3499 Number of sequences better than 1.0e-05: 324 Number of HSP's gapped: 3207 Number of HSP's successfully gapped: 324 Length of query: 232 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 129 Effective length of database: 26,499,029 Effective search space: 3418374741 Effective search space used: 3418374741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)