BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0004.p (256 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport sys... 321 6e-88 BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport sys... 309 3e-84 BH0273 [V] COG1136 ABC-type antimicrobial peptide transport syst... 291 6e-79 BH0753 [V] COG1136 ABC-type antimicrobial peptide transport syst... 287 1e-77 lin1859 [V] COG1136 ABC-type antimicrobial peptide transport sys... 263 2e-70 >BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 321 bits (823), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 20/258 (7%), Positives = 50/258 (19%), Gaps = 3/258 (1%) Query: 1 LPILDVHNLSKIY---EGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDE 57 + + I+ + N A + M +G + A Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 58 PTSGEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQ 117 ++ + + R + + R ++ + F L + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 118 EMEYRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKA 177 L L+ + + L + PT Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 178 AGEVMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNI 237 E + + E + D + G + + I Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 Query: 238 IDMLSLLGGGGHDLPAVR 255 + + + Sbjct: 241 LTVYGTCMPMLNLTRRKG 258 >BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 309 bits (791), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 13/254 (5%), Positives = 41/254 (16%) Query: 3 ILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTSGE 62 + +L EG + A + + + Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 63 VMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEMEYR 122 V + L + F ++ T + + Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 123 LGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGEVM 182 + + + +++++ R + ++ G Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 183 NLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDMLS 242 ++ E A + + + Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 Query: 243 LLGGGGHDLPAVRL 256 R Sbjct: 244 YGTCMPMLNLTRRK 257 >BH0273 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 291 bits (745), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 18/249 (7%), Positives = 46/249 (18%) Query: 3 ILDVHNLSKIYEGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTSGE 62 + L + +L+++ ++ + I S Sbjct: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 Query: 63 VMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEMEYR 122 + P ++ F+ + ++ E+ Sbjct: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 Query: 123 LGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGEVM 182 + E L T S Q M ++ Sbjct: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 Query: 183 NLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIIDMLS 242 + + + A + + M+ Q I + Sbjct: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVY 244 Query: 243 LLGGGGHDL 251 +L Sbjct: 245 GTCMPMLNL 253 >BH0753 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 17/254 (6%), Positives = 44/254 (17%), Gaps = 3/254 (1%) Query: 3 ILDVHNLSKIY---EGKVSIHALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPT 59 + +L+++ ++ + I Sbjct: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 60 SGEVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEM 119 S + P ++ F+ + ++ Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 120 EYRLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAG 179 E+ + E L T S Q M ++ Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 180 EVMNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRGSSRAAFFQNIID 239 + + + A + + M+ Q I Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 240 MLSLLGGGGHDLPA 253 + +L Sbjct: 242 TVYGTCMPMLNLTR 255 >lin1859 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 18/251 (7%), Positives = 49/251 (19%), Gaps = 2/251 (0%) Query: 3 ILDVHNLSKIYEGKVSI-HALNHIRFAVEQGEFVGIMGPSGSGKTTLLNVIATIDEPTSG 61 + +L EG + +L+++ ++ + I S Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 62 EVMINGRDPRGLGRKDRALFRRKELGFVFQHFNLLDTLTVEENVVLPLTLAGFTVQEMEY 121 + P ++ F+ + ++ E+ Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 122 RLGEVADRLGIRALLDKRTNEISGGQMQRVAIARAMIHRPSLILADEPTGSLDSKAAGEV 181 + E L T S Q M ++ Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 182 MNLLAEVNGTEGTTVLMVTHDAVAASFCHRVIFIKDGRFHSEMYRG-SSRAAFFQNIIDM 240 + + + A + + M+ + I+ + Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 Query: 241 LSLLGGGGHDL 251 + Sbjct: 244 YGTCMPMLNLT 254 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,908,250 Number of extensions: 784612 Number of successful extensions: 18494 Number of sequences better than 1.0e-05: 2194 Number of HSP's gapped: 15796 Number of HSP's successfully gapped: 2418 Length of query: 256 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 152 Effective length of database: 26,383,695 Effective search space: 4010321640 Effective search space used: 4010321640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)