BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0135.0001.p (289 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0963 [V] COG1968 Uncharacterized bacitracin resistance protein 173 3e-43 AGc5051 [J] COG1670 Acetyltransferases, including N-acetylases o... 165 6e-41 AGc505 [V] COG1968 Uncharacterized bacitracin resistance protein 165 6e-41 CAC0501 [V] COG1968 Uncharacterized bacitracin resistance protein 165 9e-41 mll4634 [V] COG1968 Uncharacterized bacitracin resistance protein 147 2e-35 >CAC0963 [V] COG1968 Uncharacterized bacitracin resistance protein Length = 307 Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 169/294 (57%), Gaps = 14/294 (4%) Query: 2 ELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDM-----WLKSQEFLGKYAANTFKVVI 56 L+ I K I+ GI+EG+TEF PVSSTGHMII+ + K G + F+++I Sbjct: 4 NLIFIFKIILEGIIEGVTEFLPVSSTGHMIILGSIIGFKEGAKPVSLYGAEYIHMFEIII 63 Query: 57 QLGSILAVVVIFRNRFIDLL-------GLKRFSRKELTAVPEG-QPAVETTGRLKL-AQV 107 QLG+ILA+VV++ ++ L +K + + V E T K + Sbjct: 64 QLGAILAIVVLYWDKIFSALKPSNLFPSMKEHEKSGIGVVGEFFVKGYNTMPGFKFWTNI 123 Query: 108 IVGLIPAGVLGFLFEDYIDEHLFSTSTVLIGLVVGAILMICADLLAPKKIKTESVDQITY 167 +V IPA V+G F+ ID+ LF + V L+VGA+ MI A+ K+ K +SVD+IT Sbjct: 124 VVACIPAIVIGLPFQKKIDKLLFFPAPVAAALMVGAVWMIFAENKYRKRAKIKSVDEITI 183 Query: 168 RQALSVGLIQCLSLWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLK 227 +QA+ +G QCL+LWPG SRS STI G ++G++ A A+F+F +A+P+M GASL+ L+K Sbjct: 184 KQAIVIGCFQCLALWPGMSRSASTIIGAWIVGVATVAGAEFSFFLAIPMMLGASLLFLIK 243 Query: 228 NWQYFTLDDLPFFIAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAVV 281 N + + GFI AF+ AL+ + F+ + + + FA+YR+ + +V Sbjct: 244 NSVVLSSVQILGLAVGFIVAFIVALVVVDRFISFLKKKPMRIFAVYRLAIGIIV 297 >AGc5051 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 194 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 0/278 (0%), Positives = 0/278 (0%), Gaps = 25/278 (8%) Query: 5 TIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLG-KYAANTFKVVIQLGSILA 63 + I + + + G A + Sbjct: 5 IGLTGSIGMGKTTTAKLFAEEGVPVLDS-------DEVVHGLYRAEAVPLIDAAFPGTTI 57 Query: 64 VVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFLFED 123 ++ R + L V PA + +V L D Sbjct: 58 SGMVDRQK--------------LGDVLRKNPANFNRLEEIVH-PLVRNRQEAFLAKARID 102 Query: 124 YIDEHLFSTST-VLIGLVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQCLSLW 182 L G ++ P+ + + + + ++ Sbjct: 103 DRAFALLDIPLLFETGAEGRVDKVVVVSCA-PEIQRERVLSRPGMTEEKFEMILARQMPD 161 Query: 183 PGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPFFIA 242 Sbjct: 162 221 Query: 243 GFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAV 280 Sbjct: 222 259 >AGc505 [V] COG1968 Uncharacterized bacitracin resistance protein Length = 133 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 0/278 (0%), Positives = 0/278 (0%), Gaps = 25/278 (8%) Query: 5 TIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLG-KYAANTFKVVIQLGSILA 63 ++ L V + ++ + Sbjct: 5 VLVTHGKLAEEFRHALEHVVGPQKLIET-------VCIGPEDDMDQRRQDIIDAVARAND 57 Query: 64 VVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGFLFED 123 + + ++ + +L L Sbjct: 58 GNGVIILT--------------DMFGGTPSNLAISVMNNGNV-EVIAGVNLPMLIKLAGV 102 Query: 124 YIDEHLFSTST-VLIGLVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQCLSLW 182 ++++ + Sbjct: 103 RSEDNMDKALQDASDAGRKYINVASRVLSG- 161 Query: 183 PGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLPFFIA 242 Sbjct: 162 221 Query: 243 GFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAV 280 Sbjct: 222 259 >CAC0501 [V] COG1968 Uncharacterized bacitracin resistance protein Length = 274 Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 108/293 (36%), Positives = 174/293 (59%), Gaps = 30/293 (10%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLGKYAANTFK----VVI 56 ME + I+KAI LGIVEG+TE+ P+SSTGHMI+V+ EF+ FK VVI Sbjct: 1 MEHIEILKAIFLGIVEGITEWLPISSTGHMILVN-------EFIRLNVTEAFKQVFLVVI 53 Query: 57 QLGSILAVVVIFRNRFIDL-LGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAG 115 QLG+IL+VV+++ N+ I L + +K++ ++ ++I+ IPA Sbjct: 54 QLGAILSVVLLYFNKLIPFSLNGGFYLKKDVVSM--------------WIKIIISCIPAT 99 Query: 116 VLGFLFEDYIDEHLFSTSTVLIGLV-VGAILMICADLLAPKKIKTESVDQITYRQALSVG 174 ++G F+D ID ++ TV I L+ G + ++ + K + S+ +ITY A+ +G Sbjct: 100 IVGIPFDDKIDALFYNYQTVSITLISFGILFIMIENHNKGKHPRITSISEITYTTAVLIG 159 Query: 175 LIQCLS-LWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFT 233 + Q ++ ++PG SRSG+TI G +L+G+S AA++TF +A+P+M GASL+ L K +FT Sbjct: 160 IFQLIAAVFPGTSRSGATIVGALLIGVSRTVAAEYTFFLAIPVMFGASLLKLFKFGLHFT 219 Query: 234 LDDLPFFIAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIIL--AAVVYFV 284 ++ G +SAF+ ++L+++F + I R F YRIIL A +VYF+ Sbjct: 220 STEITILFIGMLSAFIVSILAIKFLMIYIKRHDFKAFGWYRIILGCAVLVYFL 272 >mll4634 [V] COG1968 Uncharacterized bacitracin resistance protein Length = 268 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 160/282 (56%), Gaps = 25/282 (8%) Query: 1 MELLTIIKAIILGIVEGLTEFAPVSSTGHMIIVDDMWLKSQEFLG-KYAANTFKVVIQLG 59 ME TI++A++LG++EGLTEF PVSSTGH+++ + FLG F+++IQLG Sbjct: 1 MESQTIVEALLLGLLEGLTEFIPVSSTGHILL-------AGHFLGFNSTGKAFEILIQLG 53 Query: 60 SILAVVVIFRNRFIDLLGLKRFSRKELTAVPEGQPAVETTGRLKLAQVIVGLIPAGVLGF 119 +ILA++ ++ R +L LT R + +++ +PA ++G Sbjct: 54 AILAILSVYFRRLWQML--LDLPHDRLT-------------RHFVIGILIAFLPAAIIGA 98 Query: 120 LFEDYIDEHLFSTSTVLIG-LVVGAILMICADLLAPKKIKTESVDQITYRQALSVGLIQC 178 L D+I LF + ++ L++G ++++ D + K + + V++ R L +GL QC Sbjct: 99 LAHDFIKTVLFESPRLICTMLIIGGVILLAVDRMNLKPVYRD-VERFPTRLYLQIGLFQC 157 Query: 179 LSLWPGFSRSGSTISGGVLLGMSHRAAADFTFIMAVPIMAGASLISLLKNWQYFTLDDLP 238 LSL PG SRSGSTI G +LLG+ RAAA+F+F +A+P M GA L KN T DLP Sbjct: 158 LSLIPGTSRSGSTIVGALLLGVDKRAAAEFSFFLAIPTMVGAFAFDLFKNRNVLTSADLP 217 Query: 239 FFIAGFISAFLFALLSMRFFLKLINRIKLMPFAIYRIILAAV 280 GF++AF+ AL +R+ L ++R F +R+++ V Sbjct: 218 IIAIGFVAAFVTALFVVRYLLDYVSRNGYSLFGWWRLVVGIV 259 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,225,179 Number of extensions: 815220 Number of successful extensions: 2564 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 2534 Number of HSP's successfully gapped: 12 Length of query: 289 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 184 Effective length of database: 26,268,361 Effective search space: 4833378424 Effective search space used: 4833378424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)