BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0038.p (461 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 108 2e-23 SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic ... 76 1e-13 TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic ... 75 2e-13 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 67 5e-11 lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic... 66 1e-10 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 105/405 (25%), Positives = 188/405 (46%), Gaps = 35/405 (8%) Query: 50 EQVTITHYTIDS-EDRTFIEKLIPDFEKEHPNIQVKVEKAPYEQFDSKLQTLIAGGKSPD 108 ++ IT+Y + D ++K++ +FEK++P+I+V V+ + + +KLQT IAGG +PD Sbjct: 29 DKTEITYYQFSAPADGKALDKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPD 88 Query: 109 VTSHYGYGGFAEYYNKDMLLDLTDLIKEDGFKPEDYHIPDNLMK----IYTVKDRTYGIP 164 Y F +Y K +L DLT I++D +D+ P L K + + YG+ Sbjct: 89 AF-ELNYETFMQYAEKGVLADLTSYIEKD----KDFD-PSTLNKQAYDAFKYDGKQYGMV 142 Query: 165 VNMYVTLMLYNKDMFDAAKLSYPPSDYEDKSWTFDKMVEEAKKMTLVSDDIAKTQYGVDF 224 + + +YNKD+FD A + YP +D WT+ AKK+T + + T V Sbjct: 143 ESFSNVVTIYNKDLFDKAGVEYPTAD-----WTWKDEEAAAKKLTDAKNKVWGTSQPV-- 195 Query: 225 TWAERDMRPLYFGAEPYSEDTWSNGGVPSETHFDSPKVIAAYHKLFDLIFKDKVSPTSEW 284 T E G + +D ++T +SP+ + A L + + + KV+P+ Sbjct: 196 TMNEFFKVAAQNGGSIFDKDM-------TKTTINSPENVEALTHLTNEVTESKVAPSPS- 247 Query: 285 SKSVAGQ-NGDPFVAGKIGMSIGGSWNLAGANDFPFKIGVAAVPWGGNDKVRSTLFVDPL 343 ++GQ D F+ G+I M G W D PFK V GN + + F + + Sbjct: 248 --DLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVE--AGNKQKATHFFANGI 303 Query: 344 MILKDSKHPKEAFEWIKYLVTTEVQEKSIELSGGNPPVNTEAAEAYYKHFEGIDPQDVKK 403 + KDS + AF++ ++ + K I ++ TE E + + P + + Sbjct: 304 GVSKDSDKKEAAFKFASFMSANKEAAK-IRIANNWELPATENKEILQPYLDATPPDNREA 362 Query: 404 VYEGAVKYGFESYNHLITNYSQINDMFINELQPVETGHKTLEEVM 448 V+E + ++ ++++I+D +E + V G T E+ + Sbjct: 363 VFES---LQYMVLPPVVKDWNKISDYTNSEFEKVLNGESTPEKAL 404 >SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 419 Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 94/342 (27%), Positives = 144/342 (42%), Gaps = 48/342 (14%) Query: 52 VTITHYTIDSEDRTFIEKLIPDFEKEHPNIQVKVEKAPYEQFDSKLQTLIAGGKSPDVTS 111 VTI ++ E +E++ DFEKE+P I+VKV P L+T + G PDV + Sbjct: 34 VTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVP--NAGEVLKTRVLAGDVPDVVN 91 Query: 112 HYGYGGFAEYYNKDMLLDLTDLIKEDGFKPEDYHIPDNLMKIYTVKDRTYGIPVNMYVTL 171 Y + + K + + DL +D K + + + Y V ++ Y +P Sbjct: 92 IYPQSIELQEWAKAGVFE--DLSNKDYLK----RVKNGYAEKYAVNEKVYNVPFTANAYG 145 Query: 172 MLYNKDMFDAAKLSYPPSDYEDKSWTFDKMVEEAKKMTLVSDDIAKTQYGVDFTWAERDM 231 + YNKD F+ L P T+D+ + LV D +AK Q F A D Sbjct: 146 IYYNKDKFEELGLKVPE--------TWDEFEQ------LVKDIVAKGQ--TPFGIAGADA 189 Query: 232 RPLYFGAEPYSEDTWSNGGVPSETH--FDSPKVIAAYHKLFDLIFKDKV----------S 279 L G + T + GG + + + P I KL D I KD + S Sbjct: 190 WTLN-GYNQLAFATATGGGKEANQYLRYSQPNAI----KLSDPIMKDDIKVMDILRINGS 244 Query: 280 PTSEWSKSVAGQNGDPFVAGKIGMSIGGSWNLAGANDFP--FKIGVAAVPWGGNDKVRS- 336 W + F G + M+ GSW + N+ FKIG +P G +K +S Sbjct: 245 KQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIP--GKEKGQSL 302 Query: 337 TLFVDPLM--ILKDSKHPKEAFEWIKYLVTTEVQEKSIELSG 376 T+ L I +KHPKEA +++Y+ EV +K ++ G Sbjct: 303 TVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDG 344 >TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 150/344 (43%), Gaps = 43/344 (12%) Query: 66 FIEKLIPDFEKEHPNIQVKVEKAPYEQFDSKLQTLIAGGKSPDVTSHYGYGGFAEYYNKD 125 FI+ +I +E+ +P++++ E P++ KL + G PDV + E+ K Sbjct: 37 FIQGIIDRYEELNPDVEIVWEDVPWDVLQQKLLAAFSSGNPPDVVNLNAQWTI-EFAQKK 95 Query: 126 MLLDLTDLIKEDGFKPEDYHIPDNLMKIYTVKDRTYGIPVNMYVTLMLYNKDMFDAAKL- 184 +L L DL+ E+ DN++K T KD YGIP V ++ YNK++F+ A L Sbjct: 96 VLFPLNDLLPEEVIN----QYFDNMIKGLTWKDGIYGIPWYTAVDVIFYNKEIFEKAGLD 151 Query: 185 -SYPPSDYEDKSWTFDKMVEEAKKMTLVSDDIAKTQYGVDFTWAERDMRPLYFGAEPYSE 243 YPP + D+ + +++E I + + F W G Y+ Sbjct: 152 PKYPPRTW-DEILLYSVLIKEKTGKYGALPTIFQDPSAI-FNWD---------GLNLYTV 200 Query: 244 DTWSNGGVPSETHFDSPKVIAAYHKLFDLIFKDKVSPT-----SEWSKSVAGQNGDPFVA 298 D N + E FD P+ +K + ++K K P+ EW+++ + + A Sbjct: 201 D--ENNRI-KEVLFDRPEYAHTLNK-WATLYKQKYIPSEIVQGGEWTRAT-----ELYQA 251 Query: 299 GKIGMSIGG-------SWNLAGANDFPFKIGVAAVPWGGNDKVRSTLFVDPLMILKDSKH 351 G++ M I G WN A + K VA +P VR + + L +++ SK+ Sbjct: 252 GELAMLITGVQFADRVKWN---APEIYEKSDVAPIP-APKPGVRMSGWYSTLNVVRGSKN 307 Query: 352 PKEAFEWIKYLVTTEVQEKSIELSGGNPPVNTEAAEAYYKHFEG 395 PKEA ++ ++ E Q +L P + + ++ +G Sbjct: 308 PKEAAKFAAFVANLENQIAFCKLVTIFPTLKAAVNDPWFSKDDG 351 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 82/347 (23%), Positives = 158/347 (45%), Gaps = 35/347 (10%) Query: 51 QVTITHYTIDSEDRTFIEKLIPDFEKEHPNIQVKVEKAPYEQFDSKLQTLIAGGKSPDVT 110 ++T+ Y+ ++ + E++ FE E+P I + E P++ KL T I+ G + D+ Sbjct: 16 RMTVAEYS--AKTGPYFEEVKKAFEAENPGITLNFEVVPWDVLLQKLTTDISAGTNADL- 72 Query: 111 SHYGYGGFAEYYNKDMLLDLTDLIKEDGFKPEDY--HIPDNLMKIYTVKDRTYGIPVNMY 168 S G ++ + + L DG+ +++ + + + +TYG+P+ Sbjct: 73 SIIGTRWLIDFVQQGIAEPL------DGYMNDEFKGRFIETFLSPSVLDGKTYGLPIAAS 126 Query: 169 VTLMLYNKDMFDAAKLSYPPSDYEDKSWTFDKMVEEAKKMTLVSDDIAKTQYGVDFTWAE 228 V M YNKD+F+ A + PP+++ D++ +A K+ + + +G+ E Sbjct: 127 VRAMYYNKDLFEKAGIKNPPANW-------DELKADAAKIKALGGE--NYGFGLQGKEIE 177 Query: 229 RDMRPLYFGAEPYSEDTWSNGGVPSETHFDSPKVIAAYHKLFDLIFKDKVSP---TSEWS 285 D+ Y+ Y + + G + +P + A KL+ + D ++ TS Sbjct: 178 TDVY-YYYAMWSYGTEILNKDGT---SGLSTPGALEA-AKLYKSMIDDGLTQPGVTSYAR 232 Query: 286 KSVAGQNGDPFVAGKIGMSIGGSW--NLAGANDFPFKIGVAAVPWGGNDKVRSTLFVDPL 343 + V QN F GK+GM I + N K GVAA+P G + D + Sbjct: 233 EDV--QN--LFKQGKVGMMITAPFLSNQIKEEAPNLKYGVAAIPAGPTGARGTYGVTDSV 288 Query: 344 MILKDSKHPKEAFEWIKYLVTTEVQEKSIELSGGNPPVNTEAAEAYY 390 ++ ++SK+ +EA++ + +L + + K + + G PVN E A+ Y Sbjct: 289 IMFQNSKNKEEAWKVLDFLFQKDWRAKFTQ-NEGFLPVNKEEAKMDY 334 >lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 417 Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 142/330 (43%), Gaps = 37/330 (11%) Query: 67 IEKLIPDFEKEHPNIQVKVEKAPYEQFDSKLQTLIAGGKSPDVTSHYGYGGFAEYYNKDM 126 +EK I + K +VK E + KL T IAGG+ PD+ Y A Y K + Sbjct: 50 LEKQIDSYNKSQDKYKVKY--VMQENVEEKLLTGIAGGELPDIIMWDRY-QTALYAPKGV 106 Query: 127 LLDLTDLIKEDGFKPEDYHIPDNLMKIYTVKDRTYGIPVNMYVTLMLYNKDMFDAAKLSY 186 L L L+KED K +D++ + +K T D+ YG+P+ ++ YNK + A + Sbjct: 107 LEPLDKLVKEDNVKMDDFY--EESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVK- 163 Query: 187 PPSDYEDKSWTFDKMVEEAKKMTLVSDDIAKTQYGVDFTWAERDMRPLYF---GAEPYSE 243 PP+ T+D++ A+K T D TQ G+ + + LY G E + Sbjct: 164 PPT-------TWDELATAAQKTT-KWDGNKMTQAGMSLQ--DVGLFNLYLMQAGGELVTP 213 Query: 244 DTWSNGGVPSETHFDSPKVIAAYHKLFDLIFKDKVSPTSEWSKSVAGQNGDPFVAGKIGM 303 D +T F+S + + L + DK+ + + D F AGK M Sbjct: 214 DN-------KKTAFNSEQGLEV------LNYWDKMQNDLKVYQRGFDDGSDAFAAGKEAM 260 Query: 304 SIGGSWNLAGANDFP-FKIGVAAVPWGGNDKVRSTLFVDPLMILKDSKHPKEAFEWIKYL 362 + G W LA N GV P G N + + L++ K ++H A++++K+ Sbjct: 261 TYNGPWALADYNKVENLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWW 320 Query: 363 VTTEVQEKSIELS--GGNPPVNTEAAEAYY 390 T E +E + G P N AAE Y Sbjct: 321 TTKP--ENGVEFAKISGWLPANKIAAEDEY 348 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,502,001 Number of extensions: 1439998 Number of successful extensions: 2189 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 2165 Number of HSP's successfully gapped: 43 Length of query: 461 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 351 Effective length of database: 25,691,691 Effective search space: 9017783541 Effective search space used: 9017783541 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)