BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0037.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 171 2e-42 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 168 8e-42 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 168 1e-41 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 165 1e-40 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 163 3e-40 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 5/247 (2%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 +S SLK+ E+ + PT P WSNYR++F + F ++ N+++ A G + Sbjct: 37 LSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCS 94 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 L Y FAR + RG LFVL LST+M+P +IPQF+L + W+DT +IVP FGS Sbjct: 95 LAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVGWVDTPWAMIVPGLFGS 154 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 A+ +L+RQFF TLP +L +A +DGC +++W+I LP WND Sbjct: 155 AFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLP-HSRPAVLVLGVLTWVNVWND 213 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 L P+L + + TL +G+ L + W +LM AS+L ++P+V L+A+AQ+ FV Sbjct: 214 FLWPLLMIQRNSLATLTLGLVRLRGE--YVARWPVLMAASMLMLVPLVILYAVAQRSFVR 271 Query: 286 GIVLTGI 292 GI +TG+ Sbjct: 272 GIAVTGL 278 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 144/249 (57%), Gaps = 5/249 (2%) Query: 48 TSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQ---FGTLYKNSLIIAVLTVIGTLISS 104 +S K + + +P+ + SNY + + + F T KNS II L+ IG ++SS Sbjct: 50 SSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPFLTFIKNSAIIVGLSTIGAVMSS 109 Query: 105 GLVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFG 164 ++AYGFAR +G +F F ++ T+MLP+ +MIPQ+++F+ ++W+++F P++VP FFG Sbjct: 110 AVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQYIMFAKLDWLNSFKPIVVPQFFG 169 Query: 165 SAYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWN 224 A+ IFL+ QF T+PEEL +A RIDGCG +W+I LPL W Sbjct: 170 HAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWRIILPL-IAPALATSAIFSFYWKWE 228 Query: 225 DLLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFV 284 +L+ P+LYL+ E + + + + + W + S +++LP++ +F L QK V Sbjct: 229 ELIQPLLYLNKPELYPVSLALKLFLDTE-SASNWGAMFAMSAVSLLPVILVFFLFQKYIV 287 Query: 285 EGIVLTGIK 293 +GI TG+K Sbjct: 288 QGISTTGLK 296 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 140/247 (56%), Gaps = 5/247 (2%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 +S SLK+ E+ + PT P WSNYR++F + F ++ N+++ A G + Sbjct: 37 LSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCS 94 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 L Y FAR + RG LFVL LST+M+P +IPQ +L + W+DT +IVP FGS Sbjct: 95 LAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGS 154 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 A+ +L+RQFF TLP +L +A +DGC +++W+I LP WND Sbjct: 155 AFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLP-HSRPAVLVLGVLTWVNVWND 213 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 L P+L + + TL +G+ L + W +LM AS+L ++P+V L+A+AQ+ FV Sbjct: 214 FLWPLLMIQRNSLATLTLGLVRLRGE--YVARWPVLMAASMLMLVPLVILYAVAQRSFVR 271 Query: 286 GIVLTGI 292 GI +TG+ Sbjct: 272 GIAVTGL 278 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 141/252 (55%), Gaps = 6/252 (2%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDI---FDTLQFGTLYKNSLIIAVLTVIGTLI 102 V++SLK E+ + +P + WSNY D F F +KNS II VIG ++ Sbjct: 32 VASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITTSVVIGAIL 91 Query: 103 SSGLVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAF 162 SS +VAYGFAR + + + LF +++T+MLP +IPQ++LF ++ W++TF PLIVPAF Sbjct: 92 SSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTFYPLIVPAF 151 Query: 163 FGSA-YNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXX 221 G + IFLL QF +P EL +A IDGC ++W++ LPL Sbjct: 152 LGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPL-LKPALVTVAIFAFMW 210 Query: 222 XWNDLLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQK 281 W+D L P++YL+ ++ T+ +G+ + + W L+ S L++LP +F Q+ Sbjct: 211 TWDDFLAPLIYLNKTDIQTVALGLRNFMDAE-SGTSWGALLAMSTLSLLPQFIIFLFFQR 269 Query: 282 QFVEGIVLTGIK 293 VEGI TG+K Sbjct: 270 YLVEGISTTGLK 281 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 137/247 (55%), Gaps = 5/247 (2%) Query: 46 VSTSLKSKKEMLKFPPTFLPESWAWSNYRDIFDTLQFGTLYKNSLIIAVLTVIGTLISSG 105 +S SLK + E+ + PT LP WSNY ++FD + F ++ N+++ A +G + Sbjct: 40 LSGSLKKEGEIRE--PTLLPAHPQWSNYTEVFDLIPFWRMFFNTVLYAGYVTVGQVFFCS 97 Query: 106 LVAYGFARFRGRGNQFLFVLVLSTMMLPYPAIMIPQFVLFSHMNWIDTFLPLIVPAFFGS 165 L Y FAR + RG LFVL L T+M+P +IPQF+L + W DT +IVP FGS Sbjct: 98 LAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAMIVPGLFGS 157 Query: 166 AYNIFLLRQFFSTLPEELFDAGRIDGCGELRMWWKIALPLXXXXXXXXXXXXXXXXXWND 225 A+ +L+RQFF TLP +L +A +DGC +++W++ LP WND Sbjct: 158 AFGTYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLP-HAKPAVGVLAVLTWVNVWND 216 Query: 226 LLTPVLYLSSSEKFTLPVGMASLTSSRFRIPPWHLLMVASVLAMLPIVTLFALAQKQFVE 285 L P+L + + TL +G+ + W ++M S+L +LP+V ++ +AQ+ FV Sbjct: 217 FLWPLLMIQRNSLATLTLGLVRMRGEYGTC--WPVIMATSMLIILPLVIIYTIAQRAFVR 274 Query: 286 GIVLTGI 292 GI +T I Sbjct: 275 GITVTRI 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,067,578 Number of extensions: 596563 Number of successful extensions: 2227 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 1913 Number of HSP's successfully gapped: 141 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)