BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0036.p (297 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 226 2e-59 BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 221 9e-58 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 221 1e-57 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 219 3e-57 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 216 3e-56 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 181/288 (62%), Gaps = 2/288 (0%) Query: 6 SRRQT-FYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMFHNE 64 +R++T F++ +F+ P L+GFL+F PIL SL SFTD+D++ F G NY +F++ Sbjct: 5 TRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDP 64 Query: 65 LFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMSLLW 124 FWKS T+ + + +P +Q I LR FFR + P + S VA+SL+W Sbjct: 65 EFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVW 124 Query: 125 YWIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTA-GSGMILFLAGLQGVP 183 W+FNP GL NY LS GI GP+WL +P TA+ A+II S W G M+LFL GLQ + Sbjct: 125 KWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNIS 184 Query: 184 ASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNYST 243 S EAAN+DGA + R +IT+P+++P F I+ LI+SFQVF Q +MT+GGP+ +T Sbjct: 185 PSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGAT 244 Query: 244 WFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHY 291 V N+Y AF+ + GY+SA++W+L IV+ I+T I KL R+ +Y Sbjct: 245 MTLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKRWSNY 292 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 122/292 (41%), Positives = 180/292 (61%), Gaps = 3/292 (1%) Query: 8 RQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMFHNE-LF 66 +++F Y ISPWL+GF + P+++SLY+SFTDYD++ ++GL NY +F ++ F Sbjct: 27 KESFVGYAMISPWLLGFFGLVIGPMIASLYFSFTDYDMLSSANWVGLQNYIHIFTSDPRF 86 Query: 67 WKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSG-VAMSLLWY 125 +S+ VTL + V P++ + G F T Y PS++ G VA++++W Sbjct: 87 VQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRKGSGLFSTIYYIPSIIGGSVAVAVVWK 146 Query: 126 WIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTAGSGMILFLAGLQGVPAS 185 +F + G N L FG G +W+ + D AL LI++ W GS MI+FLAGL+ +P Sbjct: 147 QLFGSR-GAVNSFLELFGFSGVNWIGSTDYALSILILLVVWQFGSPMIIFLAGLRQIPQE 205 Query: 186 LIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNYSTWF 245 L EAA++DGA FR F +ITLPM++PV+ F LIM I F FTQA+++T GGP ST F Sbjct: 206 LYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMTFTQAYLITGGGPLDSTLF 265 Query: 246 YVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYEGGGRR 297 Y LY AF+ R GY+SA+AW+LL+++ +T + K S+ +VHYE G R Sbjct: 266 YAVYLYEVAFEYLRMGYASAMAWILLVIIGGITFVFFKSSSYWVHYESEGGR 317 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 120/296 (40%), Positives = 186/296 (62%), Gaps = 7/296 (2%) Query: 3 KSES-RRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMF 61 KS S R+ Y FISP+++GFL F + P+ +SL+ SFT YD+ PK+IGL N+ EMF Sbjct: 11 KSRSIRKDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPKWIGLDNFKEMF 70 Query: 62 H-NELFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSG-VA 119 +E +W+S+ VT Y L VP++ + +RT Y PS++ G VA Sbjct: 71 TGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGSVA 130 Query: 120 MSLLWYWIFNPQIGLFNYMLSWFGIHGPS-WLMNPDTALYALIIMSFWTAGSGMILFLAG 178 ++++W IF G+ N +L + GI W NP +AL+ LI++S W GS M++FLAG Sbjct: 131 VAIMWRNIFGND-GVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLAG 189 Query: 179 LQGVPASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMT--Q 236 L+ +P+S +EAA++DGA R + F ITLP+++P++ F L+M I +F FT A++++ + Sbjct: 190 LKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKGE 249 Query: 237 GGPNYSTWFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHYE 292 GGP T Y L+ AF ++ GY+SA+AWV+L++V ++T I+ K S+ +VHYE Sbjct: 250 GGPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYE 305 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 126/291 (43%), Positives = 183/291 (62%), Gaps = 3/291 (1%) Query: 3 KSESRRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMF- 61 K ++ F+ Y+FI+P ++GF +FAL P+L S+Y SFTD+D+ + P + G NY +F Sbjct: 20 KRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGADNYYRLFV 79 Query: 62 HNELFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMS 121 ++LF K+V T Y + +PI +Q + FRTA + P++ S VA++ Sbjct: 80 TDDLFRKTVFNTF-YAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAIT 138 Query: 122 LLWYWIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFWTA-GSGMILFLAGLQ 180 LLW WIFN GL N ML++ GIHGP WL + A+ A+II W G MIL+LA LQ Sbjct: 139 LLWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQ 198 Query: 181 GVPASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPN 240 GV +L EAA++DG ++ F++IT+P ISP F LI I + Q F + +MT+GGPN Sbjct: 199 GVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPN 258 Query: 241 YSTWFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNRYVHY 291 YST VY L+ +AF+ GY+SA+AWVL I+++I+T I KL+ ++VHY Sbjct: 259 YSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 177/286 (61%), Gaps = 1/286 (0%) Query: 3 KSESRRQTFYMYMFISPWLVGFLVFALYPILSSLYYSFTDYDIIHPPKFIGLANYTEMFH 62 KS Q Y+FI+ ++ +F + PI +L+ SFTDYDI++ P +IG NY +MF Sbjct: 7 KSVQIHQQRMAYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFR 66 Query: 63 NELFWKSVTVTLRYTLVSVPIQXXXXXXXXXXXHQTIPLRGFFRTAMYFPSMVSGVAMSL 122 + F S+ T+ YT + VP+ + G FRT Y P + S VA + Sbjct: 67 DPYFLISLKNTIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATAT 126 Query: 123 LWYWIFNPQIGLFNYMLSWFGIHGPSWLMNPDTALYALIIMSFW-TAGSGMILFLAGLQG 181 +WYW+ NPQ GL N +L WFGI+GP+WL + + A++A+++MS W T G+ M++FLAGLQG Sbjct: 127 IWYWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQG 186 Query: 182 VPASLIEAANLDGAGRFRIFLNITLPMISPVLLFQLIMGLIDSFQVFTQAFVMTQGGPNY 241 +PA+L EA+ ++GA R++ F +T P +S M +I++FQVF QA+V+T+GGP Sbjct: 187 IPANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGN 246 Query: 242 STWFYVYNLYTSAFKEYRAGYSSALAWVLLIVVMILTAIIMKLSNR 287 ST VY +Y F + GY+SA+++VL +++++ + I M+++ Sbjct: 247 STITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKE 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,810,431 Number of extensions: 776609 Number of successful extensions: 4526 Number of sequences better than 1.0e-05: 167 Number of HSP's gapped: 4185 Number of HSP's successfully gapped: 168 Length of query: 297 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 191 Effective length of database: 26,153,027 Effective search space: 4995228157 Effective search space used: 4995228157 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)