BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0028.p (238 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR2155 [E] COG0765 ABC-type amino acid transport system, permeas... 167 2e-41 SMa2197 [E] COG0765 ABC-type amino acid transport system, permea... 165 4e-41 BH1462 [E] COG0765 ABC-type amino acid transport system, permeas... 160 1e-39 Cgl1299 [E] COG0765 ABC-type amino acid transport system, permea... 153 2e-37 STM0592 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 150 1e-36 >DR2155 [E] COG0765 ABC-type amino acid transport system, permease component Length = 291 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 8/222 (3%) Query: 2 EFAEGVWAYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIW 61 + E V Y + F++GA T+KLTLVS ++ +L+G I + + S L++ A+ +IW Sbjct: 69 QMPEPVGQY--ADLFVEGAQMTLKLTLVSGLIGLLVGMIAGIMRSSPSALVRAPASFFIW 126 Query: 62 IFRGIPVMVQLIFVYTALPQF------GIRLTGFQSAFVALALNEAAYMAEIVRSGLASV 115 + RG P++VQ++FVY ALP + L F SA +ALALN AY AE++R+G+ +V Sbjct: 127 LIRGTPLLVQILFVYNALPPLLKTIGINLELNEFWSAVIALALNVGAYNAEVIRAGILAV 186 Query: 116 GKGQHRAANALGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLT 175 +GQ AA +LG++ Q M VVLPQA R++VPP N + +LK S++AS + +L L+ Sbjct: 187 PRGQSEAARSLGLSAGQTMNAVVLPQALRIVVPPLVNNLVALLKDSSLASTIALLELTLS 246 Query: 176 AQQTASANFDYVDTLIAAVIYYLAFTALFTLVQSYLERRMDI 217 Q+ +S +F V L YLA T + TL LE+R+ I Sbjct: 247 GQRVSSESFQPVPVLTTVAAVYLALTTVLTLFTDQLEKRVKI 288 >SMa2197 [E] COG0765 ABC-type amino acid transport system, permease component Length = 304 Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 137/237 (57%), Gaps = 25/237 (10%) Query: 10 YLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGIPVM 69 YL L G T+ LT+V+ ++ V+LG I A+ M+ ++ +A +YIW FRG PV+ Sbjct: 60 YLFDSRILWGLSLTVWLTVVTMVIGVVLGTIFAIMAMADNVVISTVANAYIWFFRGTPVL 119 Query: 70 VQLIFVYTA---LPQF--GIRLTGF-------------QSAFVALALNEAAYMAEIVRSG 111 VQLIF Y PQ G+ T +A + L LNE AYM+EI+RSG Sbjct: 120 VQLIFWYNLGALFPQLSVGVPFTSLWVSVPTNTLISPVTAAVLGLGLNEGAYMSEIIRSG 179 Query: 112 LASVGKGQHRAANALGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTD 171 L SV GQ +AA +LGM N + + ++LPQA VI+PPT NQ IGMLKTS++ SV+ D Sbjct: 180 LMSVDPGQRQAAKSLGMTNGKTLWRILLPQAMPVIIPPTGNQTIGMLKTSSLVSVISLAD 239 Query: 172 LLLTAQQTASANFDYVDTLIAAVIYYLAFTALFTLVQSYLER-------RMDITRSR 221 LL +AQ S NF + LI A I+YLA T + + VQ +ER R +IT+ R Sbjct: 240 LLYSAQTIYSRNFQTIPLLIVACIWYLAATTILSAVQVRIERHFARSSQRANITQPR 296 >BH1462 [E] COG0765 ABC-type amino acid transport system, permease component Length = 218 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 134/200 (67%), Gaps = 2/200 (1%) Query: 17 LDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGIPVMVQLIFVY 76 L+G T++ VS + ++LG ++A+ K+S+++L + A Y IFRG P+++QL+ +Y Sbjct: 16 LEGVWVTLQFVSVSLLFGLVLGIVLAIFKISKYRLFRWFADFYTSIFRGTPLILQLLMIY 75 Query: 77 TALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANALGMNNWQRMRY 136 ALPQFG+ ++ FQ+AF+A LN AAY++EI+R+G+ +V KGQ AA ALG+ M Sbjct: 76 LALPQFGVDISQFQAAFLAFGLNSAAYVSEIIRAGIQAVDKGQREAAEALGIPYRPMMLR 135 Query: 137 VVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFDYVDTLI-AAVI 195 ++LPQA R I+P N+FI + K SA+ SV+G TDL+ AQ T++ + Y++ L+ +I Sbjct: 136 IILPQAMRNILPALFNEFINLTKESAIVSVIGVTDLMRRAQITSAETYLYLEPLLFVGLI 195 Query: 196 YYLAFTALFTLVQSYLERRM 215 YY+ L T++ LERR+ Sbjct: 196 YYVLVMGL-TVIGRLLERRL 214 >Cgl1299 [E] COG0765 ABC-type amino acid transport system, permease component Length = 316 Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 16/229 (6%) Query: 9 AYLGSRAFLDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGIPV 68 +YL A++T+ LTL+S I+ V+LG I+A+ +MS ++QG+A Y+WIFRG P+ Sbjct: 59 SYLFDTRIATAALHTIALTLLSMILGVVLGAILAVMRMSGNPVMQGVAWLYLWIFRGTPI 118 Query: 69 MVQLIF------VYTALPQFGIRLTGFQS--------AFVALALNEAAYMAEIVRSGLAS 114 VQL+F +Y ++ G QS A + L LNEAAYMAEIVRSG+ + Sbjct: 119 YVQLVFWGLLGSLYQSI-NLGFAEIDLQSLLSNMFLLAVIGLGLNEAAYMAEIVRSGIQA 177 Query: 115 VGKGQHRAANALGMNNWQRMRYVVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYT-DLL 173 V +GQ A+ ALGMN MR +LPQA R+I+PPT N+ I MLKT+++ + Y+ +L Sbjct: 178 VPEGQMEASKALGMNWSMTMRRTILPQAMRIIIPPTGNELISMLKTTSLVVAIPYSLELY 237 Query: 174 LTAQQTASANFDYVDTLIAAVIYYLAFTALFTLVQSYLERRMDITRSRN 222 + A + F+ V L+ A +YL T++ + Q YLE+ + +R Sbjct: 238 GRSMDIAYSLFEPVPMLLVAASWYLVITSILMVGQYYLEKHFEKGSTRT 286 >STM0592 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 335 Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 17/201 (8%), Positives = 45/201 (22%) Query: 17 LDGAINTMKLTLVSQIVAVLLGFIIALAKMSRWKLLQGLATSYIWIFRGIPVMVQLIFVY 76 L ++ + + L ++ A + + R + ++ + Sbjct: 16 LLLLLSLAAVLSLVIGAKPLPAAVVLEAFTGVCQSADCTIVLDARLPRTLAGLLAGGALG 75 Query: 77 TALPQFGIRLTGFQSAFVALALNEAAYMAEIVRSGLASVGKGQHRAANALGMNNWQRMRY 136 A + L +N A A ++ + L + A + Sbjct: 76 LAGALMQTLTRNPLADPGILGVNNGASFAIVLGAALFGFSTPLEQLFMAFSGALIASLIV 135 Query: 137 VVLPQAFRVIVPPTANQFIGMLKTSAMASVVGYTDLLLTAQQTASANFDYVDTLIAAVIY 196 + P G+ + + + LL + I ++ Sbjct: 136 AFTGSQGGGQLSPVRLTLAGVALGAVLEGLTSGIALLNPEVYDQLRFWQAGSLDIRSLQT 195 Query: 197 YLAFTALFTLVQSYLERRMDI 217 A + Sbjct: 196 LKVALAPVVIAGIVALFLSRA 216 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,384,757 Number of extensions: 526058 Number of successful extensions: 2205 Number of sequences better than 1.0e-05: 209 Number of HSP's gapped: 2082 Number of HSP's successfully gapped: 210 Length of query: 238 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 135 Effective length of database: 26,499,029 Effective search space: 3577368915 Effective search space used: 3577368915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 114 (48.5 bits)