BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0027.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value FN0800 [ET] COG0834 ABC-type amino acid transport/signal transdu... 133 3e-31 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 130 3e-30 AF0231 [ET] COG0834 ABC-type amino acid transport/signal transdu... 124 2e-28 STM0830 [ET] COG0834 ABC-type amino acid transport/signal transd... 121 1e-27 ZglnH [ET] COG0834 ABC-type amino acid transport/signal transduc... 121 2e-27 >FN0800 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 230 Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 118/234 (50%), Gaps = 14/234 (5%) Query: 54 SFLVEKGVLTYGTAATFPPFEYMLNNEFTGFDIELGQAIAKEMGVEAKIQSMNFDGLIPA 113 S + V+ GT A F PFEY+ N+ GFDI+L AI+KE G+E KIQ M FDGL+PA Sbjct: 8 SVFAKSNVVYVGTNAEFAPFEYLDKNKIVGFDIDLLDAISKETGLEFKIQDMAFDGLLPA 67 Query: 114 LQGKRIDIINSAMYIKPEREEQVDFI-PYMGLADSIVVKSGNPHGIKSMDDLSGYTVAVT 172 LQ K++D++ + M PER++ V F PY A +V+ G +KS DLSG V V Sbjct: 68 LQTKKVDMVIAGMTATPERQKTVAFSKPYFK-AKQVVITKGENKSLKSFKDLSGKKVGVM 126 Query: 173 RGAVEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADA-FLHSSPGAAYLQE 231 G + V E +KI A A+LA Q + DA L S P Y Sbjct: 127 LGFTGDTVVSEI---------KGVKIERFNAAYAAILALSQNKIDAVVLDSEPAKKYTAN 177 Query: 232 EKPGVFEIAGSFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKYH 285 K F IA + IA RK D E + AL K+ NG Y ++++KY Sbjct: 178 NKQ--FVIANIPAEEEDYAIAFRKNDKELINKVNVALDKIKANGEYDKILKKYF 229 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 246 Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 125/229 (54%), Gaps = 13/229 (5%) Query: 59 KGVLTYGTAATFPPFEYMLNN-EFTGFDIELGQAIAKEMGVEAKIQSMNFDGLIPALQGK 117 +G L G +A FPPFE++ N GFD++L + IA+ +GVE KI M FDGLIP+L K Sbjct: 27 RGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTK 86 Query: 118 RIDIINSAMYIKPEREEQVDFI-PYMGLADSIVVKSGNPHGIKSMDDLSGYTVAVTRGAV 176 +ID+I S M I ER++ V F PY IVV+ + K+ +DL G TVAV G Sbjct: 87 KIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFRPKTYEDLVGKTVAVQIGTT 146 Query: 177 EEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAAYLQEEKPGV 236 +I V +++ IK++ DA L ++GRADA + S A + P + Sbjct: 147 GDIEVSKYD---------GIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDL 197 Query: 237 FEIAGSFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKYH 285 +G ++ + GIAVRK DT+ I + L++ ++ Y L+EK+ Sbjct: 198 VISSGVLSSE-QYGIAVRKEDTDLLEFINSVLRE-LKKSPYDVLIEKWF 244 >AF0231 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 264 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 9/249 (3%) Query: 40 GSSNPQETASAAAPSFLVEKGVLTYGTAATFPPFEYM--LNNEFTGFDIELGQAIAKEMG 97 G + E A LVE G LT G+ +PPFE+ E+ GFDI+L + IAK MG Sbjct: 18 GCTQQAEQKEEKAQIKLVEPGYLTVGSDIAYPPFEFTDEKTGEYAGFDIDLMKEIAKRMG 77 Query: 98 VEAKIQSMNFDGLIPALQGKRIDIINSAMYIKPEREEQVDFI-PYMGLADSIVVKSGNPH 156 +EAK + +DG+IP L + D+I SAM I ER +QVDF PY A +++ + Sbjct: 78 LEAKFVNTAWDGIIPGLLAHKYDVICSAMTITEERAKQVDFSDPYFE-AKQVIITRADET 136 Query: 157 GIKSMDDLSGYTVAVTRGAVEEINVREHNVKLKQADKPEIKILALPTANDAVLATEQGRA 216 I+ ++DL+G VAV +G + + +LK +++I +A++A ++G A Sbjct: 137 DIQDVEDLNGKVVAVQQGTTGDFAAQ----RLKDEKGIQLEIKRFEGTPEALMAVQKGDA 192 Query: 217 DAFLHSSPGAAYLQEEKPGVFEIAGSFG-ADTKIGIAVRKGDTETKTAIEAALKKVVENG 275 DA + + A +E PG++ I S A GIAV K + I LK++ E+G Sbjct: 193 DAAIIDNFVAYIAAKENPGLYRIVESDEFAPEYYGIAVNKDNPALLEKINEVLKEIKEDG 252 Query: 276 TYKQLMEKY 284 TY ++ K+ Sbjct: 253 TYDKIYNKW 261 >STM0830 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 248 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 62 LTYGTAATFPPFEYMLNNEFTGFDIELGQAIAKEMGVEAKIQSMNFDGLIPALQGKRIDI 121 L T F PFE+ +++ GFD++L AIAKE+ ++ ++ M+F G+IPALQ K ID+ Sbjct: 27 LVVATDTAFVPFEFKQGDKYVGFDVDLWDAIAKELKLDYTLKPMDFSGIIPALQTKNIDL 86 Query: 122 INSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMDDLSGYTVAVTRGAVEEINV 181 + + I ER++ +DF + +V+ N + IKS+ DL G VAV G ++ Sbjct: 87 ALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSG-TGSVDY 145 Query: 182 REHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAAY-LQEEKPGVFEIA 240 + N+K K + P ++A + RADA LH +P Y ++ G F+ Sbjct: 146 AKANIKTKD-------LRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAV 198 Query: 241 GSFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKY 284 G + G+A KG E + + ALK + ENGTY ++ +K+ Sbjct: 199 GESLEAQQYGVAFPKGSDELREKVNGALKTLRENGTYNEIYKKW 242 >ZglnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Length = 248 Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 62 LTYGTAATFPPFEYMLNNEFTGFDIELGQAIAKEMGVEAKIQSMNFDGLIPALQGKRIDI 121 L T F PFE+ +++ GFD++L AIAKE+ ++ +++ M+F G+IPALQ K +D+ Sbjct: 27 LVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDL 86 Query: 122 INSAMYIKPEREEQVDFIPYMGLADSIVVKSGNPHGIKSMDDLSGYTVAVTRGAVEEINV 181 + + I ER++ +DF + +V+ N + +KS+ DL G VAV G ++ Sbjct: 87 ALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSG-TGSVDY 145 Query: 182 REHNVKLKQADKPEIKILALPTANDAVLATEQGRADAFLHSSPGAAY-LQEEKPGVFEIA 240 + N+K K + P ++A + RADA LH +P Y ++ G F+ Sbjct: 146 AKANIKTKD-------LRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAV 198 Query: 241 GSFGADTKIGIAVRKGDTETKTAIEAALKKVVENGTYKQLMEKY 284 G + GIA KG E + + ALK + ENGTY ++ +K+ Sbjct: 199 GDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKW 242 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,900,442 Number of extensions: 879472 Number of successful extensions: 2820 Number of sequences better than 1.0e-05: 144 Number of HSP's gapped: 2647 Number of HSP's successfully gapped: 146 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 115 (48.9 bits)