BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0019.p (438 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj1128c [M] COG0463 Glycosyltransferases involved in cell wall b... 80 7e-15 BH3657_1 [M] COG0463 Glycosyltransferases involved in cell wall ... 79 1e-14 SA0248 [M] COG0463 Glycosyltransferases involved in cell wall bi... 75 2e-13 RC0623 [M] COG0463 Glycosyltransferases involved in cell wall bi... 74 3e-13 HI0868 [M] COG0463 Glycosyltransferases involved in cell wall bi... 74 5e-13 >Cj1128c [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 309 Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 2/98 (2%) Query: 120 LPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVI 179 +PK+SVI+ T+NR+ L +A++SI QD+ EI V DD SSD T ++ DD R+ Sbjct: 1 MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDDTKSVVQNLQKDDDRIK 60 Query: 180 FMQNET-NQGPGHNRRKALEAHGDGEYTLFLDDDDYLI 216 + N+ QGP N+ L+ GE+ FLDDDD L+ Sbjct: 61 YFLNQNYKQGPNGNKNNGLD-QASGEFVTFLDDDDELL 97 >BH3657_1 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 301 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 0/102 (0%), Positives = 13/102 (12%), Gaps = 1/102 (0%) Query: 113 SSAAPSTLPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSF 172 + + + + ++ + + Sbjct: 103 PDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 Query: 173 GDDPRVIFMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDY 214 ++ + + + Sbjct: 163 DTIAAIVRKHLPEATHHFPEDYITDR-SQRFMASEIIREKLM 203 >SA0248 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 573 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 5/119 (4%) Query: 122 KVSVIITTYNRKEFLHQAVQSILQQDYPHKE--ITVIDDCSSDGTAELMSRSFGDDPRVI 179 K SVI+ TYN ++++ + + S+ +QD+P E + V+DDCS+D T +++ + + + + Sbjct: 3 KFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEK-YRNKLNLK 61 Query: 180 FMQNETNQG-PGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAFV 237 Q ETN G PG R AL+ +GE+ LF+D DDY+ + A + + H ++ + Sbjct: 62 VSQLETNSGGPGKPRNVALK-QAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLI 119 >RC0623 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 281 Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 23/248 (9%) Query: 118 STLPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGD-DP 176 S LPK+S+++ YNRK+ L A++S L Q + E+ +IDDCS D + +++R++ + D Sbjct: 3 SNLPKISIVLPVYNRKKLLPFAIESCLNQSFKDFELIIIDDCSKDNSV-IVARTYAEQDS 61 Query: 177 RVIFMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYLIDRSYFSKAVYFHQQHPEIAF 236 R+ + NETN+ + A + GEY + DD+ L + K V PEI Sbjct: 62 RIKVIVNETNKRLPASLNIAFK-EAKGEYFTWTSDDN-LFHENALEKMVKILDNSPEIGL 119 Query: 237 VAANVFLEYSKTEQLKPSSLRLSRIIPKEAYFKNFEQKGYPKPASTLTAIFKRDTLMKMD 296 V+ +Y+ + +RL + P+ ++ +++ D ++ Sbjct: 120 ----VYTDYTLIDDHGKVGIRLYQEPPEFLPIRD---------CVGACFLYRADLARQVG 166 Query: 297 ILNMNM--VNDASIYLRALLIGDAGFIDTFAGVYRIHGNNITFNLSQSFLIENLEEKRLI 354 N NM V+D +LR L+ I YR+H ++T +E + KR++ Sbjct: 167 GYNENMQLVDDYEYWLRFGLVTKFAHIPESLYFYRVHNQSLTIERK----VEAKQAKRVL 222 Query: 355 RNMAIERY 362 + + ++Y Sbjct: 223 KALFKDQY 230 >HI0868 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 250 Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 120 LPKVSVIITTYNRKEFLHQAVQSILQQDYPHKEITVIDDCSSDGTAELMSRSFGDDPRVI 179 +P +S+I+ YN + +L+Q + S L Q Y + E+ +IDD S+D + E+++ D RV Sbjct: 3 MPLISIIMPVYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDKRVK 62 Query: 180 FMQNETNQGPGHNRRKALEAHGDGEYTLFLDDDDYL 215 TNQGP R LE G+Y FLD DD++ Sbjct: 63 LFFTPTNQGPAAARNIGLE-KAQGDYITFLDSDDFI 97 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,741,408 Number of extensions: 1157813 Number of successful extensions: 3792 Number of sequences better than 1.0e-05: 73 Number of HSP's gapped: 3795 Number of HSP's successfully gapped: 73 Length of query: 438 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 329 Effective length of database: 25,807,025 Effective search space: 8490511225 Effective search space used: 8490511225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 117 (49.7 bits)