BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0016.p (343 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA0248 [M] COG0463 Glycosyltransferases involved in cell wall bi... 87 3e-17 lin1068_1 [M] COG0463 Glycosyltransferases involved in cell wall... 82 1e-15 SP1771_1 [M] COG0463 Glycosyltransferases involved in cell wall ... 78 3e-14 HI0868 [M] COG0463 Glycosyltransferases involved in cell wall bi... 72 1e-12 PH0396 [M] COG0463 Glycosyltransferases involved in cell wall bi... 72 2e-12 >SA0248 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 573 Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 12/202 (5%) Query: 2 YNLEHYVEPLLNSLLNQ--SEKRFELILVDDGSRDRTAQVAEEMLARHPI-LQAKLIRTA 58 YN E Y+ LLNSL Q + FE+++VDD S D+T Q+ E+ R+ + L+ + T Sbjct: 11 YNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKY--RNKLNLKVSQLETN 68 Query: 59 NGGVSAARNTGLAAASGDYVLFLDGDDYADSSLVQRVASSTAGGRTDILCWGYNLVREDG 118 +GG RN L A G++VLF+D DDY + ++ A+ +D+L V G Sbjct: 69 SGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRG 128 Query: 119 STIVSFTSASSDTTGSEALKNIFVHKTLRIWTGSIAFKRTFLLENGISYTERCVNGEDQE 178 F + + T + + + + + ++ L +N I + E + EDQ Sbjct: 129 VPQSMFKETAPEVT-------LLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQL 181 Query: 179 FIYKALARASRVISIPDVLSYY 200 F KA A+R+ + D YY Sbjct: 182 FTMKAYLNANRISVLSDKAYYY 203 >lin1068_1 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 387 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 6/230 (2%) Query: 1 MYNLEHYVEPLLNSLLNQSEKRFELILVDDGSRDRTAQVAEEMLARHPILQAKLIRTANG 60 +YN+E + L S+ Q+ +E++L+DDGS D+T ++ E + P + KL NG Sbjct: 23 LYNVEEVILETLESIHEQTFDSYEVLLIDDGSTDKTIEIVTEYIKDKP--RFKLYTQPNG 80 Query: 61 GVSAARNTGLAAASGDYVLFLDGDDYADSSLVQRVASSTAGGRTDILCWGYNLVREDGST 120 G ++ARN GL A G Y+ F+D DD + +Q + ++ +G Sbjct: 81 GPASARNHGLRLAIGMYICFVDSDDILPNYSLQLMYDGAISTGAKLITGATKRFNSEGEW 140 Query: 121 IVSFTSASSDTTGSEALKNIFVHKTLRIWTGSIAFKRTFLLENGISYTERCVNGEDQEFI 180 + + +K + + L G A L +G+ + E GEDQ F+ Sbjct: 141 FIPMHIQYN--IAKPGMKTLLKNPELFYSIGPCAKLYHHSLIDGVFFPENIRYGEDQPFV 198 Query: 181 YKALARASRVISIPDVLSYY-LQRTSSITGTYNVHKFDVVAAFKRVAEYF 229 AL +A + ++ V+ YY L+ S + T +V K D + K V + F Sbjct: 199 LHALLQAKDIYTVEKVVYYYRLRDGESQSLTQSVDK-DPIRILKSVFQIF 247 >SP1771_1 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 259 Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 4/112 (3%) Query: 1 MYNLEHYVEPLLNSLLNQSEKRFELILVDDGSRDRTAQVAEEMLAR-HPILQAKLIRTAN 59 +YN+E+Y+ L+S++ Q+ K E+++V+DGS D + ++ +E H IL I N Sbjct: 13 VYNVENYLRKCLDSIITQTYKNIEIVVVNDGSTDASGEICKEFSEMDHRIL---YIEQEN 69 Query: 60 GGVSAARNTGLAAASGDYVLFLDGDDYADSSLVQRVASSTAGGRTDILCWGY 111 G+SAARNTGL SG+YV F+D DD+ + V+ + + DI Y Sbjct: 70 AGLSAARNTGLNNMSGNYVTFVDSDDWIEQDYVETLYKKIVEYQADIAVGNY 121 >HI0868 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 250 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%) Query: 1 MYNLEHYVEPLLNSLLNQSEKRFELILVDDGSRDRTAQVAEEMLARHPILQAKLIRT-AN 59 +YN E Y+ + S LNQS + ELIL+DDGS D++ ++ ++ + + KL T N Sbjct: 12 VYNAECYLNQGILSCLNQSYQNIELILIDDGSTDKSIEIINNIIDKDK--RVKLFFTPTN 69 Query: 60 GGVSAARNTGLAAASGDYVLFLDGDDY 86 G +AARN GL A GDY+ FLD DD+ Sbjct: 70 QGPAAARNIGLEKAQGDYITFLDSDDF 96 >PH0396 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 321 Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 16/247 (6%) Query: 1 MYNLEHYVEPLLNSLLNQSEKRFELILVDDGSRDRTAQVAEEMLARHPILQAKLIRTAN- 59 +YN ++YV LL S+ Q+ +ELILVDD S D T ++ E R+P + ++++T Sbjct: 10 VYNTKNYVPRLLTSIEKQTYTNWELILVDDHSNDGTYELLLEFKDRYPN-KVEVLKTPKP 68 Query: 60 -GGVSAARNTGLAAASGDYVLFLDGDDYADSSLVQRVAS---STAGGRTDILCWGYNLVR 115 G +N G+ +SG ++ F+D DD+ + ++ S S G T+ Y V Sbjct: 69 RSGPMIGKNMGIEVSSGKFLAFVDSDDWWSETFLKDTVSNIKSFGGVSTE-----YYDVF 123 Query: 116 EDGSTIVSFTSASSDTTGSEALKNIFVHKTLRIWTGSIAFKRTFLLENGISYTERCVNGE 175 ED V ++ E + + R G+ +R + GI + E E Sbjct: 124 EDSDKKVHVKASKHGVVSWEDVLKL----KARFGNGNSLLRRKIVENYGIRFPEHLWYSE 179 Query: 176 DQEFIYKALARASRVISIPDVLSYYLQRTSSITGTYNVHKFDVVAAFKRVAEYFSAHPFH 235 D F + L+ R+ +P Y+L R +S+ + + + + RV E Sbjct: 180 DIYFYTQYLSVIDRIYVVPSPDFYHLVRGASMVRSDKIKQESKIEQTIRVYEEVCTR-IQ 238 Query: 236 EVHTISD 242 E+ +SD Sbjct: 239 EISKVSD 245 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,639,938 Number of extensions: 933225 Number of successful extensions: 2194 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 2229 Number of HSP's successfully gapped: 81 Length of query: 343 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 236 Effective length of database: 26,037,693 Effective search space: 6144895548 Effective search space used: 6144895548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)