BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0009.p (417 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc4327 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 271 1e-72 SMc01820 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamin... 269 5e-72 mll1631 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 260 3e-69 PA0444 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 258 1e-68 BMEI1643 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamin... 254 1e-67 >AGc4327 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 271 bits (694), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 0/406 (0%), Positives = 0/406 (0%), Gaps = 8/406 (1%) Query: 9 KQIFVNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKVDDM 68 I ++ V ENN + R+ + + Sbjct: 5 SMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILA 64 Query: 69 GTMYATLEGTEAGP-PVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLPVT 127 + ++ + + G + E ++ + Sbjct: 65 EGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGK 124 Query: 128 VMNFTNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANRIK 187 N G L F + E + G+ ++ Sbjct: 125 SPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAM 184 Query: 188 EATAYLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXXXX 247 Sbjct: 185 244 Query: 248 XXXXXXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEAR---HKDMDIVRTV 304 Sbjct: 245 304 Query: 305 -EEIINALPEEL-LGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHD 362 Sbjct: 305 -- 362 Query: 363 AQFVAGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVL 408 Sbjct: 363 408 >SMc01820 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 269 bits (688), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 0/402 (0%), Positives = 0/402 (0%), Gaps = 8/402 (1%) Query: 13 VNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKVDDMGTMY 72 + + + N L ++G D + ++ + G Sbjct: 10 IVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTI 69 Query: 73 ATLEGTEAGP-PVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLPVTVMNF 131 A + E T + + TL + + Sbjct: 70 AVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICG 129 Query: 132 TNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANRIKEATA 191 + R + + R + + + + + Sbjct: 130 NSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRE 189 Query: 192 YLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXXXXXXXX 251 Sbjct: 190 249 Query: 252 XXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKD---MDIVRT-VEEI 307 Sbjct: 250 309 Query: 308 INALPEEL-LGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHDAQFV 366 Sbjct: 310 -- 367 Query: 367 AGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVL 408 Sbjct: 368 409 >mll1631 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 260 bits (664), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 0/405 (0%), Positives = 0/405 (0%), Gaps = 6/405 (1%) Query: 9 KQIFVNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKVDDM 68 + + + N L ++G D + ++ + Sbjct: 6 MIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 Query: 69 GTMYATLEGTEAG-PPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLPVT 127 G A + E T + + TL + Sbjct: 66 GPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS 125 Query: 128 VMNFTNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANRIK 187 + + R + + R + + + + Sbjct: 126 PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMD 185 Query: 188 EATAYLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXXXX 247 Sbjct: 186 245 Query: 248 XXXXXXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMDIVRT---- 303 Sbjct: 246 305 Query: 304 VEEIINALPEELLGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHDA 363 Sbjct: 306 - 364 Query: 364 QFVAGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVL 408 Sbjct: 365 409 >PA0444 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 0/408 (0%), Positives = 0/408 (0%), Gaps = 6/408 (1%) Query: 6 MQVKQIFVNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKV 65 + + + E +++++ + +T L + ++ Sbjct: 8 HAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP 67 Query: 66 DDMGTMYATLEGTEAG-PPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRL 124 + + G K + Sbjct: 68 TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPI 127 Query: 125 PVTVMNFTNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAAN 184 + ++ P + A + + + + Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDI 187 Query: 185 RIKEATAYLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDX 244 Sbjct: 188 247 Query: 245 XXXXXXXXXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKDMD----I 300 Sbjct: 248 307 Query: 301 VRTVEEIINALPEELLGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAG 360 Sbjct: 308 - 366 Query: 361 HDAQFVAGFLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVL 408 Sbjct: 367 414 >BMEI1643 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 0/400 (0%), Positives = 0/400 (0%), Gaps = 4/400 (1%) Query: 13 VNGERLKDTIEVFAGFGRTENNGVTRLSLSGQDVKVRNYFAACCEELGMSIKVDDMGTMY 72 ++ V ENN + R+ + + Sbjct: 9 AIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPT 68 Query: 73 ATLEGTEA-GPPVVIGSHLDTVKKGGRFDGVLGVIAGLEVVRTLVDHGIKPRLPVTVMNF 131 + ++ + + G + E ++ + Sbjct: 69 IAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPIC 128 Query: 132 TNEEGARFEPSMMASGVLSGKFDRAEMLKKKDTEGTTFAEALEASGYAGDAANRIKEATA 191 N G L F + E + G+ ++ + Sbjct: 129 GNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIR 188 Query: 192 YLELHIEQGPVLEKENLSIGLVDCVVGMACYELEVTGESDHAGTTPMDMRKDXXXXXXXX 251 Sbjct: 189 248 Query: 252 XXXXRSKLGVLDSELVFTMGRMNVLPNIHTVIPNKVIFTVEARHKD---MDIVRTVEEII 308 Sbjct: 249 308 Query: 309 NALPEELLGCTVAKTRLWGRDTVWFDPAVCALVEQAASALGYSSKKMASGAGHDAQFVAG 368 Sbjct: 309 368 Query: 369 FLPSAMIFVPSANGKSHCXXXXXXXXXXXQGVNVVLETVL 408 Sbjct: 369 408 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 29,112,558 Number of extensions: 1291649 Number of successful extensions: 2246 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 2160 Number of HSP's successfully gapped: 24 Length of query: 417 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 308 Effective length of database: 25,807,025 Effective search space: 7948563700 Effective search space used: 7948563700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)