BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0002.p (318 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1026 [L] COG0675 Transposase and inactivated derivatives 110 3e-24 TM0776 [L] COG0675 Transposase and inactivated derivatives 108 1e-23 STM1831 [G] COG3715 Phosphotransferase system, mannose/fructose/... 108 1e-23 TM0047 [L] COG0675 Transposase and inactivated derivatives 104 2e-22 Ta0475 [L] COG0675 Transposase and inactivated derivatives 96 7e-20 >TM1026 [L] COG0675 Transposase and inactivated derivatives Length = 402 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 16/219 (7%) Query: 103 LRITQK----SEKWIAQISVTVPTSEKTG-TKIMGVDLGLKVPAVAVTDDDQTCFFGNER 157 LRI Q + + +++ V EK+ + +M VDLG+ P + + G Sbjct: 145 LRIKQARLVFEDGYYLHLAIEVEIEEKSANSGVMAVDLGVLRPITCFDGKEVISYHGGVL 204 Query: 158 QN--KYIRRKFQSKRKKLGQRKK----LNAIVKLDDKEQRYMKDQD----HKISRAIVQF 207 + +Y ++ S + + + KK N +V+ + R +K+Q HKI+ + + Sbjct: 205 SSVLRYRNKRLASLQSAIAECKKGSRRYNKLVRAKKRVLRRLKNQINDIMHKITSSFIGL 264 Query: 208 AVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGVKVEYVNPA 267 + QI I + + IR+ A S + IH W F +L + I YKA+ G++V+ ++ A Sbjct: 265 CLRKQIGTIVIGDVTGIRERADYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVKLISEA 324 Query: 268 HTSRTCPKCSEKNKAQDRKYIC-SCGFETHRDRVGAMNI 305 +TS+TCP C KNK R+Y C +CGFE HRD VGA+NI Sbjct: 325 NTSKTCPVCGAKNKPNGRRYHCKTCGFEYHRDGVGAINI 363 >TM0776 [L] COG0675 Transposase and inactivated derivatives Length = 402 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 16/219 (7%) Query: 103 LRITQK----SEKWIAQISVTVPTSEK-TGTKIMGVDLGLKVPAVAVTDDDQTCFFGNER 157 LRI Q + + +++ V EK G+ +M VDLG+ P + + G Sbjct: 145 LRIKQTRLVFEDGYYLHLAIEVEIEEKNAGSGVMAVDLGVLRPITCFDGKEVISYHGGVL 204 Query: 158 QN--KYIRRKFQSKRKKLGQRKK----LNAIVKLDDKEQRYMKDQD----HKISRAIVQF 207 + +Y ++ S + + + KK N +V+ + R +++Q HKI+ + Sbjct: 205 SSVLRYRNKRLASFQSAIAECKKGSRRYNKLVRAKKRVLRRLRNQINDIMHKITSNFIGL 264 Query: 208 AVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGVKVEYVNPA 267 + QI I + + IR+ A S + IH W F +L + I YKA+ G++V+ ++ A Sbjct: 265 CLRKQIGTIVIGDVTGIRERADYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVKLISEA 324 Query: 268 HTSRTCPKCSEKNKAQDRKYIC-SCGFETHRDRVGAMNI 305 +TS+TCP C KN R+Y C +CGFE HRD VGA+NI Sbjct: 325 NTSKTCPVCGAKNNPNGRRYHCKACGFEYHRDGVGAINI 363 >STM1831 [G] COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC Length = 266 Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 0/219 (0%), Positives = 0/219 (0%), Gaps = 16/219 (7%) Query: 103 LRITQK----SEKWIAQISVTVPTSEKTG-TKIMGVDLGLKVPAVAVTDDDQTCFFGNER 157 + + + + +++ L + + V Sbjct: 145 FLQAMRIAIPAVIVAISVGTSEVQGMLNAIPEVVTGGLNIAGGMIVVVGYAMVINMMRAG 204 Query: 158 QN--KYIRRKFQSKRKKLGQRKK----LNAIVKLDDKEQRYMKDQD----HKISRAIVQF 207 + + + +Y + + + Sbjct: 205 YLMPFFYLGFVTAAFTNFNLVALGVIGAVMAILYIQLSPKYNRVAGAPAAAAGNNDLDNE 264 Query: 208 AVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGVKVEYVNPA 267 Sbjct: 265 324 Query: 268 HTSRTCPKCSEKNKAQDRKYIC-SCGFETHRDRVGAMNI 305 Sbjct: 325 363 >TM0047 [L] COG0675 Transposase and inactivated derivatives Length = 405 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 13/215 (6%) Query: 104 RITQKSEKWIAQISVTVPTSEKTGT--KIMGVDLGLKVPAVAVTDDDQTCFFGN------ 155 ++ ++ ++ +++ V + K G K+M VD+G+ P + + G Sbjct: 151 KLVYEAGRYYLHLAIEVKSEHKRGQSQKVMSVDVGILRPITCFDGSEVISYHGGVLNSIL 210 Query: 156 ERQNKY---IRRKFQSKRKKLGQRKKLN-AIVKLDDKEQRYMKDQDHKISRAIVQFAVEH 211 +NK I+R +K + KKL+ A ++ K + + D HKI+ + V+ Sbjct: 211 RYRNKRLADIQRALSRCQKGSRRYKKLSRAKRRVLYKTRNQINDVLHKITSHFIGLCVQK 270 Query: 212 QISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGVKVEYVNPAHTSR 271 I I + + NIR+ + + +H W+F +L IEYKA++ G++V ++ AHTS+ Sbjct: 271 NIGTIVVGDITNIRERTNGNDNFNQKLHQWAFRKLMSQIEYKAQIFGIEVVRISEAHTSK 330 Query: 272 TCPKCSEKNKAQDRKYICS-CGFETHRDRVGAMNI 305 TCP C +N+ R Y C+ CGFE HRD VGA+NI Sbjct: 331 TCPVCGTQNRPSGRNYKCAGCGFEYHRDGVGAINI 365 >Ta0475 [L] COG0675 Transposase and inactivated derivatives Length = 350 Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 114 AQISVTVPTSEKTGTK-IMGVDLGLKVPAVAVTDDDQTC-FFGNERQNKYIRRKFQSKRK 171 A +SV +P + K +G+D +AV D QT + ++ ++I K+++ RK Sbjct: 115 AYVSVNIPEKKMIEPKKWIGIDRNA-TGHIAVVADPQTGKIWKLGKKAEHIHNKYKAIRK 173 Query: 172 KLGQRKKLNAIVKLDDKEQRYMKDQDHKISRAIVQFAVEHQISVIRLEQLANIRQTARTS 231 KL ++KK + K+ D+E R ++D +HK+S+ IV+ A + + + I+LE+L IR + + Sbjct: 174 KLQKKKKYKLLKKIKDRESRIVRDLNHKVSKKIVEIA-QGENAGIKLEKLNGIRSNKKHT 232 Query: 232 RKNEKSIHMWSFYRLSQFIEYKAKLAGVKVEYVNPAHTSRTCPKCSEKNKAQDRKYICS- 290 + + ++ WSFY+L FI+YKAK+ G+ + YV+P +TS+ C +C +D+ + C Sbjct: 233 KPFKYGLNSWSFYQLEFFIQYKAKMNGIPLTYVDPRYTSKECSRCGYIGIREDKSFECPR 292 Query: 291 CGFETHRDRVGAMNIRY-APVIDGNSQ 316 CG H D + NI P+++G + Sbjct: 293 CGHVDHADANASFNIAVRPPLMEGTGR 319 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,307,067 Number of extensions: 711840 Number of successful extensions: 1250 Number of sequences better than 1.0e-05: 36 Number of HSP's gapped: 1237 Number of HSP's successfully gapped: 36 Length of query: 318 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 212 Effective length of database: 26,153,027 Effective search space: 5544441724 Effective search space used: 5544441724 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)