BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0001.p (491 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 71 4e-12 AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic... 71 5e-12 AGc4715 [G] COG1653 ABC-type sugar transport system, periplasmic... 69 1e-11 TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic ... 65 2e-10 YPO0612 [G] COG1653 ABC-type sugar transport system, periplasmic... 61 5e-09 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 34/319 (10%) Query: 58 EVKNAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLMT---SGQGPDVFSVDNGWLATYV 114 EVK A F NP + +N ++ +L L T +G D+ + WL +V Sbjct: 32 EVKKA---FEAENPG----ITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFV 84 Query: 115 NKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETVRLIYNKQLFRSAG 174 +G L+ Y+ RF E + S+ G Y +P + + YNK LF AG Sbjct: 85 QQGIAEPLDGYMNDEFKGRFIE---TFLSPSVLDGKTYGLPIAASVRAMYYNKDLFEKAG 141 Query: 175 LDPEQPPVTFAEVKQAAARISRAGVGVNKYGFALAAGDSQDSLQTGLEMSNTYSGVYLYN 234 + + PP + E+K AA+I +G YGF L + + + M + G + N Sbjct: 142 I--KNPPANWDELKADAAKIK--ALGGENYGFGLQGKEIETDVYYYYAMWSY--GTEILN 195 Query: 235 YRTGRYNLSVYAPW--LQLLLDMKAESSLYPGETLLKRDSALRQFADGNIGMMYATSKDY 292 + G LS +L M + PG T R+ F G +GMM Sbjct: 196 -KDGTSGLSTPGALEAAKLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVGMMITAPFLS 254 Query: 293 VKLQEYMPKDDWGVALPPVTSSASRGSGALMVIPHSPLAVNSSAPDQEAAV-------KV 345 +++E P +GVA P + +RG+ + S + +S +EA K Sbjct: 255 NQIKEEAPNLKYGVAAIPAGPTGARGTYG---VTDSVIMFQNSKNKEEAWKVLDFLFQKD 311 Query: 346 W--KFLQSEAFLNILFQQA 362 W KF Q+E FL + ++A Sbjct: 312 WRAKFTQNEGFLPVNKEEA 330 >AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 134 Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 0/280 (0%), Positives = 0/280 (0%), Gaps = 20/280 (7%) Query: 48 IALNDWTENLEVK---NAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLM---TSGQGPD 101 + T + + + ++ + Sbjct: 29 SGVPMVTAVSYKSFQELPKAKAPAVL-QKLAQAVAAEG---FSGIQINKALSSIDAHQET 84 Query: 102 VFSVDNGWLATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETV 161 Sbjct: 85 144 Query: 162 RLIYNKQLFRSAGLDPEQPPVTFAEVKQAAARISRAGVGVNKYGFALAAGDSQDSLQTGL 221 Sbjct: 145 -- 202 Query: 222 EMSNTYSGVYLYNYRTGRYNLSVYAPWLQLLLDMKAESSLYPGETLLKRDSALRQFADGN 281 Sbjct: 203 ------ 256 Query: 282 IGMMYATSKDYVKLQEYMPKDDWGVALPPV-TSSASRGSG 320 Sbjct: 257 - 295 >AGc4715 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 410 Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 19/209 (9%) Query: 147 FKGGVYFMPSSIETVRLIYNKQLFRSAGLDPEQPPVTFAEVKQAAARISRAGVGVNKYGF 206 F+ + +P + T L +NK LF+ AGLDPE PP T+AE + A A+ + G+ YG Sbjct: 128 FEDTQWGVPVAFSTKALYWNKDLFKQAGLDPETPPKTWAE-EIAFAKQIKEKTGIAGYG- 185 Query: 207 ALAAGDSQDSLQTGLEMSNTYSGVYLYNYRTGRYNLSVYAPWLQLLLDMKAESSLYP--- 263 L A +++ + T +G + + ++V +P Q+L +KA + P Sbjct: 186 -LPAKTFDNTMHQFMHWVYTNNGKVIDGDK-----ITVDSP--QVLAALKAYKDITPYSV 237 Query: 264 -GETLLKRDSALRQFADGNIGMMYATSKDYVKLQEYMPKDDWGVALPPVTSSASRGSGAL 322 G T +++ F DG +GM+ A S +LQ K +WG+A P+ A +G G L Sbjct: 238 EGPTAYEQNEIRAIFLDGKVGMIQAGSGAATRLQ--ATKINWGIATLPLGPEA-KGPGTL 294 Query: 323 MVIPHSPLAVNSSAPDQEAAVKVWKFLQS 351 ++ LA+ +E A + KF+ S Sbjct: 295 LIT--DSLAIFKGTGVEEKATEFAKFITS 321 >TM0810 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 10/141 (7%) Query: 53 WTENLE------VKNAIRQFNESNPDHIEIVMVNLSADTYNDMLNMLMTSGQGPDVFSVD 106 WT +L+ ++ I ++ E NPD +EIV ++ D L +SG PDV +++ Sbjct: 26 WTMSLKPTFTDFIQGIIDRYEELNPD-VEIVWEDVPWDVLQQKLLAAFSSGNPPDVVNLN 84 Query: 107 NGWLATYVNKGYLTNLNAYLGPADLNRFPEWARDYAHSSLFKGGVYFMPSSIETVRLIYN 166 W + K L LN L +N++ + + +K G+Y +P + YN Sbjct: 85 AQWTIEFAQKKVLFPLNDLLPEEVINQYFD---NMIKGLTWKDGIYGIPWYTAVDVIFYN 141 Query: 167 KQLFRSAGLDPEQPPVTFAEV 187 K++F AGLDP+ PP T+ E+ Sbjct: 142 KEIFEKAGLDPKYPPRTWDEI 162 >YPO0612 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 24/184 (13%) Query: 65 QFNESNPDHIEIVMVNLSADTYNDMLNMLMTSGQGPDVFSVDNGWLATYVNK-GYLTNLN 123 +FN+ P+ + +V+ N ++ L+ M +G P+V+ G+ + K G L L+ Sbjct: 42 EFNKLYPE-VNLVVSN------DEQLDTRMAAGDNPNVYIGVFGYQPAKLAKLGKLAYLD 94 Query: 124 AYLGPADLNRF--PEWARDYAHSSLFKGGVYFMPSSIETVRLIYNKQLFRSAGLDPEQPP 181 + G A+LN P + R+ G Y++P + T +IYNK+LF AGLDPE+PP Sbjct: 95 KFPGFAELNERIDPHFLRENF------GRTYYIPWNATTQMMIYNKELFAEAGLDPERPP 148 Query: 182 VTFAEVKQAAARISR---AGVGVNKYGFALAAGDSQDSLQTGLEMSNTYSGVYLYNYRTG 238 T+ E AA +IS G YG D L G N + +Y YN G Sbjct: 149 ATWDEFLLAAEKISALPPRSDGSKVYGTVF----WNDVLSFGSWYWNLLAPMY-YNVNQG 203 Query: 239 RYNL 242 +Y L Sbjct: 204 QYQL 207 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,019,419 Number of extensions: 1428843 Number of successful extensions: 4448 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 4457 Number of HSP's successfully gapped: 24 Length of query: 491 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 381 Effective length of database: 25,691,691 Effective search space: 9788534271 Effective search space used: 9788534271 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)