BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0126.0023.p
         (320 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 [F] COG1816 Adenosine deaminase                            80   4e-15
AGc2183 [K] COG0789 Predicted transcriptional regulators               78   2e-14
AGc2181 [L] COG0776 Bacterial nucleoid DNA-binding protein             78   2e-14
AGc2185 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs     78   2e-14
YNL141w [F] COG1816 Adenosine deaminase                                67   3e-11

>SPBC1198.02 [F] COG1816 Adenosine deaminase
          Length = 367

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%)

Query: 177 ELAQPIACFKSIYRAANSAGLILKAHVGEFGAADDVREAVEELGLQEVHHGIAAARSPQI 236
           E+  P   F+ +Y+ A   G+    H GE G    +R  ++ L LQ + HGI      ++
Sbjct: 184 EVDFPPELFQEVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVEDKEL 243

Query: 237 MRWLSDHNIQLNVCPTSNIMLGVAENYGRHPIRKLYDFGIPVTINTDDLLIFNQSVSREY 296
           M+ +++ NI L +CP SN+ L    +    P+R+  + G+P +IN DD   F       Y
Sbjct: 244 MKRVAEENIMLTMCPLSNLKLRCVNSIAELPVREFLEAGVPFSINCDDPAYFGGYTLENY 303

Query: 297 MNLYKSGSITAEE 309
             + K  ++T +E
Sbjct: 304 FAIQKHFNLTVKE 316


>AGc2183 [K] COG0789 Predicted transcriptional regulators
          Length = 218

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 0/148 (0%), Positives = 0/148 (0%)

Query: 172 DICGDELAQPIACFKSIYRAANSAGLILKAHVGEFGAADDVREAVEELGLQEVHHGIAAA 231
            +             S+         I      E      +   +  L  +     +   
Sbjct: 159 FVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLPLLPLLSKLRDMDVIDG 218

Query: 232 RSPQIMRWLSDHNIQLNVCPTSNIMLGVAENYGRHPIRKLYDFGIPVTINTDDLLIFNQS 291
                                                                       
Sbjct: 219                                                              278

Query: 292 VSREYMNLYKSGSITAEELNEIRLTGLK 319
                                       
Sbjct: 279                              306


>AGc2181 [L] COG0776 Bacterial nucleoid DNA-binding protein
          Length = 218

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 0/148 (0%), Positives = 0/148 (0%)

Query: 172 DICGDELAQPIACFKSIYRAANSAGLILKAHVGEFGAADDVREAVEELGLQEVHHGIAAA 231
            +             S+         I      E      +   +  L  +     +   
Sbjct: 159 FVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLPLLPLLSKLRDMDVIDG 218

Query: 232 RSPQIMRWLSDHNIQLNVCPTSNIMLGVAENYGRHPIRKLYDFGIPVTINTDDLLIFNQS 291
                                                                       
Sbjct: 219                                                              278

Query: 292 VSREYMNLYKSGSITAEELNEIRLTGLK 319
                                       
Sbjct: 279                              306


>AGc2185 [L] COG1525 Micrococcal nuclease (thermonuclease) homologs
          Length = 412

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 9/148 (6%), Positives = 27/148 (18%)

Query: 172 DICGDELAQPIACFKSIYRAANSAGLILKAHVGEFGAADDVREAVEELGLQEVHHGIAAA 231
            +     A  +           +   +   +   F        A+  L  +        A
Sbjct: 159 LMREMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA 218

Query: 232 RSPQIMRWLSDHNIQLNVCPTSNIMLGVAENYGRHPIRKLYDFGIPVTINTDDLLIFNQS 291
            +       +  +  + +   + +   V   +             P              
Sbjct: 219 PAKWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPAGV 278

Query: 292 VSREYMNLYKSGSITAEELNEIRLTGLK 319
              E +           +L  +      
Sbjct: 279 KLVEQLCQRLRVPNEIRDLARLVAEFHD 306


>YNL141w [F] COG1816 Adenosine deaminase
          Length = 347

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 7/184 (3%)

Query: 123 FTRIIDDLHRSFAPKTRFLPELALDRACDIDEVYGRMDELLAFRWFRSIDICGDELAQ-- 180
           F R  D     F   ++ +  + L R  + +E    ++E   F    +I   G + A+  
Sbjct: 122 FQRACDKAFSEFGITSKLI--MCLLRHIEPEECLKTIEEATPFIKDGTISALGLDSAEKP 179

Query: 181 -PIACFKSIYRAANSAG--LILKAHVGEFGAADDVREAVEELGLQEVHHGIAAARSPQIM 237
            P   F   Y  A S    L L AH GE G A  V +A++ L +  + HGI +    +++
Sbjct: 180 FPPHLFVECYGKAASLNKDLKLTAHAGEEGPAQFVSDALDLLQVTRIDHGINSQYDEELL 239

Query: 238 RWLSDHNIQLNVCPTSNIMLGVAENYGRHPIRKLYDFGIPVTINTDDLLIFNQSVSREYM 297
             LS     L +CP SN+ L V ++    P++K  D  +P ++N+DD   F   +   Y 
Sbjct: 240 DRLSRDQTMLTICPLSNVKLQVVQSVSELPLQKFLDRDVPFSLNSDDPAYFGGYILDVYT 299

Query: 298 NLYK 301
            + K
Sbjct: 300 QVSK 303


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 23,966,025
Number of extensions: 950285
Number of successful extensions: 3641
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3641
Number of HSP's successfully gapped: 6
Length of query: 320
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 214
Effective length of database: 26,153,027
Effective search space: 5596747778
Effective search space used: 5596747778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)