BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0017.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 227 2e-59 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 223 3e-58 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 218 1e-56 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 184 2e-46 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 183 3e-46 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/284 (39%), Positives = 176/284 (61%), Gaps = 4/284 (1%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 F+IFN L + L P +++ SF + + +P FSLD YR +F+ + I Sbjct: 12 FNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDII 71 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 ++ +++ TVVGT +F T+++AY L ++L GR+V M + T+ F GG+IPT+L+ Sbjct: 72 FRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLV 131 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 +R LGLLD +W I+P A + ++LII +FF+ IP+ LEE+AKIDG N++ IFFR++ P+ Sbjct: 132 VRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPL 191 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQ--MVSAMAGT 240 SMP +ATI+LF+ V WN + ++Y+N+SS+ PIQ L ++V SS Q + AG Sbjct: 192 SMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGF 251 Query: 241 IQKSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 + Q++K+A YPF+QK+F KG ++GS+KG Sbjct: 252 VMPP--EQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/283 (39%), Positives = 178/283 (62%), Gaps = 4/283 (1%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FD+ N L + V T+ P Y++ SF + + + +P+ F+LD Y+ VF+ Sbjct: 16 FDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTF 75 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 + +MGV++ TVVGT + +FFT +AY L + + GR + + + ++ F GG+IPTYL+ Sbjct: 76 LRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLV 135 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 ++ LGLLD +W ILP A + ++LII +FF+++P+ LEE+AKIDG +E+ +F+R+ +P+ Sbjct: 136 VKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPL 195 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVSAMAGTIQ 242 S PV+AT ALF+ V WND+F ++YIN+S+ P+Q L +V S + + T+Q Sbjct: 196 SKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILS---DLTATNGDTMQ 252 Query: 243 KSV-TSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 +V Q +KLA YPFLQK+F KGM+IGS+KG Sbjct: 253 NAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 174/282 (61%), Gaps = 1/282 (0%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 FD+ +L+ + P +V+ SF + + P FSLD YR +F+ + I Sbjct: 6 FDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDII 65 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLL 122 ++ V+V TV+GT + +F ++++AY L ++LIGR+ M + T+ F GG+IPT+L+ Sbjct: 66 YKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLV 125 Query: 123 IRDLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPI 182 ++ LGLLD++W ILP A + ++LII +FF+ IP LEE+AKIDG N+L IFF++++P+ Sbjct: 126 VKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPL 185 Query: 183 SMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVSAMAGTIQ 242 S+P +ATI+LF+ V WN Y ++Y+N+S+ PIQ L ++V SS Q + G+ Sbjct: 186 SLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMGS-G 244 Query: 243 KSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 Q++K+A YPF+QK+F KG ++GS+KG Sbjct: 245 SPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 165/284 (58%), Gaps = 6/284 (2%) Query: 3 FDIFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGI 62 F FN +LL + P+ ++ S + A + + P F+LD Y N+ Sbjct: 12 FTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNF 71 Query: 63 MMAMGVTVAKTVVGTLIHVFFTAMVAYALCSQE--LIGRKVYMIMGTITLFFGGGLIPTY 120 + + ++V + V+GT+I + AYAL ++ GRK Y+ IT+ F GGL+PTY Sbjct: 72 IRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTY 131 Query: 121 LLIRDLGLLDNFWVYILPAAFSFYDLIIFMSFFRE-IPKGLEEAAKIDGANELKIFFRVI 179 +++ LGL + W +LP A + ++LI+ ++FFR +PK LEE+A IDGAN +IF ++ Sbjct: 132 MVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIY 191 Query: 180 IPISMPVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQMVSAMAG 239 +PIS+P +AT++LF V+ WN +F G+IY N++ P+QT+L +V + +Q+ A Sbjct: 192 LPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQITDA--- 248 Query: 240 TIQKSVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIK 283 ++++ ++V+ A YPF+QKYFVKG+++G+ K Sbjct: 249 ETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 169/281 (60%), Gaps = 1/281 (0%) Query: 5 IFNNLLMLLVCFATLYPVWYVLVNSFNEGMDAMLGNIYWWPRVFSLDNYRAVFNNNGIMM 64 + N ++++ + TL P+ Y++V SF + + I + P ++++ Y+ VF++ I+ Sbjct: 25 LLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILR 84 Query: 65 AMGVTVAKTVVGTLIHVFFTAMVAYALCSQELIGRKVYMIMGTITLFFGGGLIPTYLLIR 124 ++ + + V + AY L ++L+GR+ +T+FFGGGL+PTYLL++ Sbjct: 85 GFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVK 144 Query: 125 DLGLLDNFWVYILPAAFSFYDLIIFMSFFREIPKGLEEAAKIDGANELKIFFRVIIPISM 184 +LG+L+ W I+P A + +++I+ ++F+ +P+ L EAA IDGAN+L+IFF++++P++ Sbjct: 145 ELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAK 204 Query: 185 PVVATIALFHGVYQWNDYFAGVIYINNSSLQPIQTYLYRVVAESSSNQ-MVSAMAGTIQK 243 P++ + L+ V QWN YF +IYI + +L+P+Q L +++ +S Q M+ A A + Sbjct: 205 PIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEM 264 Query: 244 SVTSQSVKLAXXXXXXXXXXXXYPFLQKYFVKGMMIGSIKG 284 ++ +K A YPF QKYF KG+M GS+KG Sbjct: 265 KRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,916,066 Number of extensions: 679695 Number of successful extensions: 2445 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 2310 Number of HSP's successfully gapped: 150 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)