BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0016.p (318 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 280 2e-75 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 240 2e-63 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 222 7e-58 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 221 9e-58 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 218 7e-57 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 209/304 (68%), Gaps = 1/304 (0%) Query: 15 QKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLE 74 Q++ IL + +Q+YL +M+L VAW++VFNYFP++G +AF+N+ S W GL+ Sbjct: 15 QRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQ 74 Query: 75 HFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPY 134 HF E F+D V++NTL +S + L++GF +PILFA+LLNE+R + FK++VQT+SYLP+ Sbjct: 75 HFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPH 134 Query: 135 FLSWVILGGILTTWLA-DVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGW 193 F+SWV++ GI+T L+ D GI+N LLM + +PV F+A+ + FW I +S +WKE+GW Sbjct: 135 FVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGW 194 Query: 194 SAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFD 253 ++II+LAA++GI P+LYEAAK+DGA R+++I ITLP I T+ ++ IL++ ++ F+ Sbjct: 195 NSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFE 254 Query: 254 QIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRIN 313 + +L N L S V+D+Y GL R+SY TA+G+ SV+ ++N + KR Sbjct: 255 KQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFT 314 Query: 314 NTSL 317 N S+ Sbjct: 315 NQSV 318 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 189/299 (63%), Gaps = 1/299 (0%) Query: 21 LRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLEHFREFF 80 ++ Y Q+ L +M+L + W+I+F Y P+YG IAF+++ I WAG +HF F Sbjct: 39 FKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLF 98 Query: 81 EDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPYFLSWVI 140 D V++NTL +S + L++GF I AILLNE+R++ FK+ VQTISY+P+FLSWV+ Sbjct: 99 TDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVV 158 Query: 141 LGGILTTWLA-DVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGWSAIIYL 199 G+++ L+ + GIIN +LMKL +I EP+ +L ++FWGI S +WK +GW+ IIYL Sbjct: 159 AAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYL 218 Query: 200 AAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFDQIMVLR 259 AAI+ I E YEAA+IDGA R QRI ITLP + + IL I+ + IL S F+ +L Sbjct: 219 AAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLM 278 Query: 260 NSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRINNTSLF 318 N +N + +DI++ + G+ FS +TA G+ K+V++ +N + KR+ LF Sbjct: 279 NPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 222 bits (565), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 13 INQKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAG 72 + ++KW RR ++ L I AL+ ++F Y PM+GIV+AF++Y + W G Sbjct: 17 LKKQKWN-FRRTWQLHVLLIPALVLA---LIFQYGPMFGIVMAFQDYKPWLGFTGSEWVG 72 Query: 73 LEHFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYL 132 L+HF FE + V+ NTL IS L+++ G +PI+ A+LLNEM + K++VQTI YL Sbjct: 73 LQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYL 132 Query: 133 PYFLSWVILGGILTTWLA-DVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKEL 191 PYFLSWVILGGIL L+ D GI+N L + +P+ FL F VIS +WKE Sbjct: 133 PYFLSWVILGGILIDVLSPDGGIVNQALGLFGI--DPIFFLGSNDWFRTTVVISDLWKET 190 Query: 192 GWSAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSN 251 G++ I++LAAI+ ++P LYEAA +DGA R+++ ITLP++ + ++ L++ ILN+ Sbjct: 191 GFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAG 250 Query: 252 FDQIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKR 311 FDQI L N L +ID Y+Y+ L N FSY TAVGL KS+I+ I + + Sbjct: 251 FDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYK 310 Query: 312 INNTSLF 318 N +F Sbjct: 311 YANWRIF 317 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 196/325 (60%), Gaps = 10/325 (3%) Query: 2 KAGVEAA-----ADPGINQK--KWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVI 54 +A VE A A P I +K + L+R++R +YL +M L G+ + ++F Y PM+G++I Sbjct: 3 QASVEQALPIESAAPSIPKKVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLII 62 Query: 55 AFKNYDIIGSIGSAPWAGLEHFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILL 114 AF++Y + + W G +HF F + +++NTL + L+ FP+PI+ A+LL Sbjct: 63 AFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLL 122 Query: 115 NEMRSVRFKKSVQTISYLPYFLSWVILGGI-LTTWLADVGIINHLLMKLHLIHEPVNFLA 173 NE+R + FK+ VQT+ Y+P+F+SWVI+ + + D G+IN ++ + + VNFL Sbjct: 123 NEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSI--TGKNVNFLM 180 Query: 174 EPKHFWGIAVISSIWKELGWSAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIA 233 F + ++ IW+E GW+ IIY AAI+ I P LYEAAK+DGA RF++I ITLP+I Sbjct: 181 SEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIR 240 Query: 234 GTVSILFILAVSGILNSNFDQIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLV 293 + +L IL + IL F+ + ++ N++N + + D Y+Y GL+ +FSYSTAVG Sbjct: 241 SVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFF 300 Query: 294 KSVIAXXXXXISNSVTKRINNTSLF 318 KS++ ++N + K+ ++ Sbjct: 301 KSIVGLIMVMLANWLAKKFGEEGVY 325 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 187/294 (63%), Gaps = 3/294 (1%) Query: 26 RQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLEHFREFFEDENL 85 R ++L ++ + G+ + ++F Y PM+G++IAFK+Y + W G ++F++FF + + Sbjct: 27 RDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDF 86 Query: 86 GYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPYFLSWVILGGIL 145 +++NTL +++L LL FP P++ A+LLNE+R +K+ +QT Y+P+F+SW I+ I Sbjct: 87 FRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSIT 146 Query: 146 TTWLA-DVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGWSAIIYLAAISG 204 + D G+IN L+M L E ++FL++ F + V+ SIWKE GW I++LAA++ Sbjct: 147 FVFFTVDTGVINKLIMSL--TGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALAT 204 Query: 205 ISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFDQIMVLRNSLNE 264 + E YEAA +DGAGRF+R+ ITLP+I T+ +L IL + LN F+Q+ ++ NSLN Sbjct: 205 VDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNR 264 Query: 265 SASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRINNTSLF 318 S + + D Y+Y G+ +SYSTAVGL KSV+ +N + K+ + LF Sbjct: 265 SVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,640,431 Number of extensions: 897311 Number of successful extensions: 2762 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 2712 Number of HSP's successfully gapped: 152 Length of query: 318 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 212 Effective length of database: 26,153,027 Effective search space: 5544441724 Effective search space used: 5544441724 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)