BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0013.p (511 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic ... 107 5e-23 lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic... 101 2e-21 BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 84 4e-16 SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic... 79 2e-14 >SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 491 Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 122/481 (25%), Positives = 212/481 (44%), Gaps = 55/481 (11%) Query: 54 TLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGEDFDM 113 +K Y GDKP D++L N K+ ++ VGA L+I +L W DYG +SV S+GE++D+ Sbjct: 42 VIKMYQIGDKPDNLDELLANAN-KIIEEKVGAKLDIQYLGWGDYGKKMSVITSSGENYDI 100 Query: 114 YLDAPWLSMNQMIDGNSLKELDAEVAKRPELKASIPDEMWEYNKFKGKIMGIPXXXXXXX 173 ++ Q L EL + K +L ++ + N GKI +P Sbjct: 101 AFADNYIVNAQKGAYADLTELYKKEGK--DLYKALDPAYIKGNTVNGKIYAVPVAANVAS 158 Query: 174 XXXXXIRKDLREKYG--LPELKTLDDLEKFLYKVKENEKDVKPFVLNGIKADKLPFILSD 231 L KYG + + + + LE L ++KE DV PF + + FI SD Sbjct: 159 SQNFAFNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVVPFAIGKV------FIPSD 212 Query: 232 SANLALDEVLEIGVNMFAYSTKDKKVVGQWASPMIADGYERVTKYYKDGIISKNIAQEQN 291 + + + L +++ +T KVV ++ P + + + K+Y+ G I K++A Sbjct: 213 NFDYPVANGLPFVIDLEGDTT---KVVNRYEVPRFKEHLKTLHKFYEAGYIPKDVATSDT 269 Query: 292 AETLFKQGKYAATYYAADGVEG-LKYSEMLQNGSDKLEIFIPNGDKAKPYTAF------- 343 + L + T++ + G Y L + +I I KP T F Sbjct: 270 SFDLQQD-----TWFVREETVGPADYGNSLLSRVANKDIQI------KPITNFIKKNQTT 318 Query: 344 QQWNFLCIPASSEHADLALDVVNWMSIKENHDLME---YGIQGKDWEPV--GDSSYKVLS 398 Q NF+ I +S++ + +++++N ++ N +L+ YG +GK+WE + ++ +VL Sbjct: 319 QVANFV-ISNNSKNKEKSMEILNLLNT--NPELLNGLVYGPEGKNWEKIEGKENRVRVLD 375 Query: 399 KYSFPGYVLTWRPTLN-------RTPDTMMKDDKKWFDFSTNPANFTLSPTAGFNFNAEK 451 Y ++ W N D +++ KK A SP GF FN + Sbjct: 376 GYKGNTHMGGWNTGNNWILYINENVTDQQIENSKKEL------AEAKESPALGFIFNTDN 429 Query: 452 VKTEYAKITPLHDSIFLPLSQGVLPADQGKKTLEKKIAGLGG-QKVIDEIQAQIDAVTSG 510 VK+E + I ++ G + D+ L +K+ G +KV++E+Q Q D Sbjct: 430 VKSEISAIANTMQQFDTAINTGTVDPDKAIPELMEKLKSEGAYEKVLNEMQKQYDEFLKN 489 Query: 511 K 511 K Sbjct: 490 K 490 >lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 485 Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 121/474 (25%), Positives = 205/474 (43%), Gaps = 45/474 (9%) Query: 51 ETVTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGED 110 E TLK Y G ++V++ VN K ++ +G + + + W DYG + +++GE+ Sbjct: 31 EVPTLKWYMIGTPQKDTEEVMKEVN-KYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGEN 89 Query: 111 FDMYLDAPWLSMNQMIDGNSL---KELDAEVAKRPELKASIPDEMWEYNKFKGKIMGIPX 167 FD+ A ++ G L K LD E K +KA + + +WE G I G+P Sbjct: 90 FDIAYSAAGEFVSYSQKGAFLPLNKYLDKEGKK---MKAELNEVLWEGATIDGNIYGVPS 146 Query: 168 XXXXXXXXXXXIRKDLREKYGL--PELKTLDDLEKFLYKVKENEKDVKPFVLNGIKADKL 225 K+L +KY + ++K DLE L +KENE + P + G K K Sbjct: 147 NKEVGEQQVYVFNKNLVDKYKMDISKVKNFSDLEPMLKTIKENEPSITP--IGGNKDFKP 204 Query: 226 PFILSDSANLALDEV--LEIGVNMFAYSTKDKKVVGQWASPMIADGYERVTKYYKDGIIS 283 F S + +D L VN + + K+V + P + + + +Y+ G ++ Sbjct: 205 AF----SYDYLIDNAVPLPFAVNQYEDTG---KIVNFYEQPDTLETLKSLHSFYQKGYVT 257 Query: 284 KNIAQEQNAETLFKQGKYAATY----YAA---DGVEGLKYSEMLQNGSDKLEIFIPNGDK 336 K+IA + + K+ + YA D G KY + Q ++ I K Sbjct: 258 KDIATSTDPWSYDKENWFVRIEKYQPYAENIWDKNTGGKYKVVTQPIAETPII------K 311 Query: 337 AKPYTAFQQWNFLCIPASSEHADLALDVVNWMSIKEN-HDLMEYGIQGKDWEPVGDSSYK 395 T Q + +S+H + A+ ++ ++ E +L++ GI+G ++ + D + Sbjct: 312 NNSVTGAIQ----AVSVTSQHPEEAVKFLDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQ 367 Query: 396 VL----SKYSFPGYVLTWRPTLNRTPDTMMKDDKKWFDFSTNPANFTLSPTAGFNFNAEK 451 L +YS P Y L L D + KW F T SP GF F++ K Sbjct: 368 DLPARVERYSMPTYALGNHFILKLYED---EPADKWDQFKTFNKKSVASPGLGFYFDSSK 424 Query: 452 VKTEYAKITPLHDSIFLPLSQGVLPADQGKKTLEKKIAGLGGQKVIDEIQAQID 505 V+TE A IT + + L G + + + + K+ G +KV+ E+Q Q D Sbjct: 425 VRTEIASITNVCNEFAPALLTGTVDPVEYTEKFKAKLNDAGMKKVMKEMQKQYD 478 >BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 500 Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 106/478 (22%), Positives = 190/478 (39%), Gaps = 63/478 (13%) Query: 53 VTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGEDFD 112 VTL Y G + V++ VN ++ + A +++ L W +Y + V ++GE +D Sbjct: 54 VTLTWYMIGTPQPDLELVMEEVN-AYTEEKINATVDLRMLDWGEYDERMQVITTSGEAYD 112 Query: 113 MYLDAPW-------------LSMNQMID--GNSLKELDAEVAKRPELKASIPDEMWEYNK 157 + + W L +N ++D G +KEL I E + Sbjct: 113 IAFTSSWANNYALNARRGAFLELNDLLDEHGQEMKEL-------------IDPAFLEGAQ 159 Query: 158 FKGKIMGIPXXXXXXXXXXXXIRKDLREKYGL--PELKTLDDLEKFLYKVKENEKDVKPF 215 GK+ +P +L EK+ L + +L DLE L +KE E DV P Sbjct: 160 VDGKLYAVPTNKEVGQQAVLSFNNELVEKHNLDLSSVHSLADLEPLLAVIKEEESDVTP- 218 Query: 216 VLNGIKADKLPFILSDSANLALDEVLEIGVNM-FAYSTKDKKVVGQWASPMIADGYERVT 274 I + A L D +L+ + F +V+ ++ + + + + Sbjct: 219 ------------IATFDAYLPFDSILQEEMPFAFRLEGNTNEVINKYEEDITMETLKTMH 266 Query: 275 KYYKDGIISKNIAQEQNAETLFKQGKYAATYYAADGVEGLKYSEMLQNGSDKLEIFIPNG 334 YYK G I + A ++ L + Y+E++ + EI Sbjct: 267 DYYKKGYIRPDAATSTDSWPLETPNWFVRKELYQ------PYAELIWTRTAGYEIATRPL 320 Query: 335 DKAKPYTAFQQWNFLCIPASSEHADLALDVVNWM-SIKENHDLMEYGIQGKDWEPVGDSS 393 + + + I A+S++ + A+ +N + S +L++ GI+G +E + D + Sbjct: 321 HEPYIFNNSVTGSMQAISATSKNPERAMMFLNLLNSDPYLRNLLDKGIEGVHYEELEDGT 380 Query: 394 YKVL----SKYSFPGYVLTWRPTLNRTPDTMMKDD--KKWFDFSTNPANFTLSPTAGFNF 447 L +Y+ P + + N+ + +DD KW F + SP GF F Sbjct: 381 INDLPARVERYNMPSFAIG-----NQLILKLYEDDPQDKWEAFEAFNESAIPSPALGFYF 435 Query: 448 NAEKVKTEYAKITPLHDSIFLPLSQGVLPADQGKKTLEKKIAGLGGQKVIDEIQAQID 505 ++ V+TE A I+ + L +G + ++ K+ G QKVIDE+Q Q D Sbjct: 436 DSNPVRTEIAAISNVTSEFSPALLKGAVDPEEYLPLFNDKLNEAGLQKVIDEMQRQFD 493 >SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 380 Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 159/353 (45%), Gaps = 23/353 (6%) Query: 53 VTLKAYFPGDKPAGFDDVLQAVNDKLKKDNVGAALNINFLPWSDYGNAVSVKMSAGEDFD 112 V L Y GDKP FD+++ N ++K + GA +++ ++ W D+ + +S +++GE++D Sbjct: 34 VKLLMYQVGDKPDNFDELMTIANKRIK-EKTGATVDLQYIGWGDWDDKMSTIIASGENYD 92 Query: 113 MYLDAPWLSMNQMIDGNSLKELDAEVAKRPELKASIPDEMWEYNKFKGKIMGIPXXXXXX 172 + ++ Q L L + AK+ ++ + N GK+ P Sbjct: 93 IAFANNYVVNAQKGAFADLTTLMPKYAKK--TYKNLDPAYIKGNTIDGKLYAFPVDANVY 150 Query: 173 XXXXXXIRKDLREKYGL--PELKTLDDLEKFLYKVKENEKDVKPFVLNGIKADKLPFILS 230 K+L +KYGL +K+ D E L + E E + F + + F +S Sbjct: 151 AQQMLSFNKELVDKYGLDISNIKSYADAENVLKQFHEKEPNTAAFAIGQV------FSMS 204 Query: 231 DSANLALDEVLEIGVNMFAYSTKDKKVVGQWASPMIADGYERVTKYYKDGIISKNIAQEQ 290 + L + V + ++ Q+ + + K+YK+G+I + A Sbjct: 205 GDYDYPLTKTQPFAVKI---DEGKPTIINQYEDESFKNNLRLMHKWYKEGLIPTDAA--T 259 Query: 291 NAETLFKQGKYAATYYAADGVEG-LKYSE-MLQNGSDKLEIFIPNGDKAKPYTAFQQWNF 348 N E +G T++ + +G + Y + +L N + K + P K + Q NF Sbjct: 260 NTEGYPLEGN---TWFMREETQGPMDYGDTILTNAAGKDIVSRPLTKPLKTTSQAQMANF 316 Query: 349 LCIPASSEHADLALDVVNWM-SIKENHDLMEYGIQGKDWEPVGDSSYKVLSKY 400 + + + S++ + A++V++ + S E + + YG++GK WE +GD K+L Y Sbjct: 317 V-VSSVSKNKEKAVEVLSLLNSDPELLNGLVYGVEGKAWEKIGDKKIKLLDGY 368 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,478,513 Number of extensions: 1556244 Number of successful extensions: 1928 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 1915 Number of HSP's successfully gapped: 5 Length of query: 511 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 400 Effective length of database: 25,576,357 Effective search space: 10230542800 Effective search space used: 10230542800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)