BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0012.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 229 4e-60 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 212 6e-55 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 211 1e-54 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 199 3e-51 SPy1593 [G] COG0395 ABC-type sugar transport system, permease co... 199 5e-51 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 117/265 (44%), Positives = 174/265 (65%), Gaps = 5/265 (1%) Query: 34 MIIGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQ-SDVLFNGYAVTIFITVVGALSALCI 92 +II S T E L +GY + P + S DAY+ + Q +F Y VTIFITVVG L ++ I Sbjct: 57 VIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYGVTIFITVVGTLMSVSI 116 Query: 93 SAMLGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQ 152 A+ Y+++ K+ + + F F + MLFSGG++PFYIV++Q+L L+N++W L+L M Sbjct: 117 IALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKNSVWALILPMAVN 176 Query: 153 PFLVFLLVSFF-RTIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWND 211 F + ++ +FF R++PE + E+ARIDGA E R+FF+I++P+S P +A++ LF L YWND Sbjct: 177 AFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIATIALFSTLAYWND 236 Query: 212 WFMGLMFVDNEKLFPLQLILRRMVSNMEAAKN---LIPASAAIAVTPPTYGVRMATTVLT 268 WF L+F+D+ KL PLQ +L R+ +N++ + L ++A+ + P RMA V+ Sbjct: 237 WFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALLDSIPQDSARMAMVVIA 296 Query: 269 IGPIVLLYPMLQKYFVKGLTVGAVK 293 PI L YP QKYFVKGLT+G VK Sbjct: 297 TLPIALSYPFFQKYFVKGLTIGGVK 321 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 172/264 (65%), Gaps = 4/264 (1%) Query: 34 MIIGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQ-SDVLFNGYAVTIFITVVGALSALCI 92 +I+ SF+ E L A+G+ L P++ S++AY+ + + L Y +TI +TV+G + ++ + Sbjct: 59 IIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYGITIVVTVIGTVCSVAM 118 Query: 93 SAMLGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQ 152 A+ Y+++ + + F F + MLFSGG++P YIV++Q+LHL+N+IW ++L + Sbjct: 119 IALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLHLRNSIWAMILPLAMN 178 Query: 153 PFLVFLLVSFF-RTIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWND 211 F + ++ +FF R+IPE + EAARI+GA E+R+F Q+++P+S P LA++ LF L YWND Sbjct: 179 AFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLGYWND 238 Query: 212 WFMGLMFVDNEKLFPLQLILRRMVSNMEAAK--NLIPASAAIAVTPPTYGVRMATTVLTI 269 WF +++DN L PLQ +L ++ +N+E + + I +A + P G +MA V++ Sbjct: 239 WFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDGAKMAMVVIST 298 Query: 270 GPIVLLYPMLQKYFVKGLTVGAVK 293 PI + YP QKYF+ GLT+G VK Sbjct: 299 LPIAITYPFFQKYFISGLTIGGVK 322 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/262 (40%), Positives = 165/262 (62%), Gaps = 2/262 (0%) Query: 34 MIIGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQ-SDVLFNGYAVTIFITVVGALSALCI 92 +II S TDE L+ +GY+ FP + LD ++ + Q D + +++F+TVVG L+ + I Sbjct: 45 VIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKILQALFISVFVTVVGTLTNVFI 104 Query: 93 SAMLGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQ 152 + Y+++ + F F L MLF+ G++P YI+V++ L L +T+W L++ ML Sbjct: 105 TTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVPMLLS 164 Query: 153 PFLVFLLVSFFR-TIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWND 211 PF + L+ SFF+ TIPE + E+ARIDGA+E R+FFQI +P+S P +A++ L AL +WND Sbjct: 165 PFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWND 224 Query: 212 WFMGLMFVDNEKLFPLQLILRRMVSNMEAAKNLIPASAAIAVTPPTYGVRMATTVLTIGP 271 WF L+++ ++ L+PLQ +L ++ NM+ + + V P RMA V+ P Sbjct: 225 WFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLIGQLGVALPKETGRMAMVVVATLP 284 Query: 272 IVLLYPMLQKYFVKGLTVGAVK 293 I +LYP Q+YFVKGLT+G VK Sbjct: 285 IAILYPFFQRYFVKGLTIGGVK 306 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/263 (39%), Positives = 162/263 (61%), Gaps = 7/263 (2%) Query: 34 MIIGSFTDEGELIAHGYTLFPQKLSLDAYKAVLQSDVLFNGYAVTIFITVVGALSALCIS 93 +I GSF E EL + +FP+ +LDAYK V + V+IFITVVG L + Sbjct: 38 IIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFT 97 Query: 94 AMLGYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQP 153 + Y LA + + L MLFSGG+IP Y+VV L L +T W L+L M P Sbjct: 98 FTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKS-LGLLDTYWALILPMAINP 156 Query: 154 FLVFLLVSFFRTIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWNDWF 213 F + ++ +FF+ +P ELEE+A+IDG +E+ VF++I +P+SKP++A+ LFYA+ WND+F Sbjct: 157 FNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFF 216 Query: 214 MGLMFVDNEKLFPLQLILRR--MVSNMEAAKNLIPASAAIAVTPPTYGVRMATTVLTIGP 271 L+++++ +PLQ++LR+ ++S++ A +A PP G+++A V+ P Sbjct: 217 HALLYINDSAKWPLQMVLRQVTILSDLTATNGDTMQNA----VPPEQGIKLAVIVIATLP 272 Query: 272 IVLLYPMLQKYFVKGLTVGAVKG 294 I+ +YP LQK+F KG+ +G+VKG Sbjct: 273 ILAVYPFLQKHFAKGMLIGSVKG 295 >SPy1593 [G] COG0395 ABC-type sugar transport system, permease component Length = 308 Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 102/261 (39%), Positives = 161/261 (61%), Gaps = 7/261 (2%) Query: 40 TDEGELIAHGYTLFPQKLSLDAYKAVLQ---SDVLFNGYAVTIFITVVGALSALCISAML 96 TDE LI HGY+ FP S AY+ + Q S + + +++FITVVG +++ Sbjct: 47 TDESYLINHGYSFFPDVWSTKAYQYIFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTY 106 Query: 97 GYSLANKRNVLQTPFLFFCYLPMLFSGGIIPFYIVVSQWLHLQNTIWVLVLTMLCQPFLV 156 Y+++ + F + + MLF+ G++ Y+VVS LHL++T+W L+L M PF + Sbjct: 107 AYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFGI 166 Query: 157 FLLVSFFR-TIPEELEEAARIDGANEMRVFFQIMIPISKPILASVGLFYALNYWNDWFMG 215 ++ +FF+ T+P+ + E+AR+DGA+E +F +I++P++ P +A++ LF AL YWNDWF Sbjct: 167 LVMRTFFKKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNA 226 Query: 216 LMFVDNEKLFPLQLILRRMVSNMEAAKNLIPASAAIA---VTPPTYGVRMATTVLTIGPI 272 L++V +E L+P+Q +L ++ SN++A SA +A + P VRMA V+ PI Sbjct: 227 LLYVQSENLYPMQYLLMKIQSNLQALAQNAGMSAQMADSLASLPKESVRMAIVVIATLPI 286 Query: 273 VLLYPMLQKYFVKGLTVGAVK 293 L YP QKYFV GLT+G VK Sbjct: 287 ALTYPFFQKYFVGGLTIGGVK 307 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,880,987 Number of extensions: 693775 Number of successful extensions: 3800 Number of sequences better than 1.0e-05: 158 Number of HSP's gapped: 3653 Number of HSP's successfully gapped: 158 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)