BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0011.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0090 [G] COG4209 ABC-type polysaccharide transport system, per... 236 3e-62 BH0794 [G] COG4209 ABC-type polysaccharide transport system, per... 224 1e-58 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 201 9e-52 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 192 5e-49 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 192 7e-49 >SP0090 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 184/291 (63%), Gaps = 5/291 (1%) Query: 29 VPGLLFFLVFSYFPIYGIMIAFKDYN-----FAKGITGSDWVGFKNFDYFFTSDDFWVIL 83 +PG L+ ++F Y P++G ++AFKDY+ F I S WVG NF + F+S D ++I Sbjct: 29 LPGALWLILFFYIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGLDNFRFLFSSRDAFIIT 88 Query: 84 RNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLF 143 RNT++ N+ FI V ++ IA++ +E+R+K +I Q+ + PYF+SW+++ + Sbjct: 89 RNTVLYNLGFIFLGLVVSVGIAIILSELRSKRMVKIFQTSMLFPYFLSWVIISFFTDAFL 148 Query: 144 GGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLY 203 ++ + N L+ +GL+ VN+ + +WPY+L + +W+G GY S+++ A I GI Y Sbjct: 149 NIDKGVFNHLLESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYSSVMYYATIMGIDPTYY 208 Query: 204 EAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTD 263 EAA +DGASK Q + +T+P L P + ++T+LAVG IF DF + Y I + LY T+ Sbjct: 209 EAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNIFRADFGLFYQIPHNAGQLYNVTN 268 Query: 264 VIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESALF 314 V+D +VF + Q D GM++A GL+QS++GLI VI +N + RRV SALF Sbjct: 269 VLDVYVFNGLTQTADIGMAAAAGLYQSVVGLILVILSNLLARRVDPNSALF 319 >BH0794 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 312 Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 190/291 (65%), Gaps = 5/291 (1%) Query: 29 VPGLLFFLVFSYFPIYGIMIAFKDYNFA-----KGITGSDWVGFKNFDYFFTSDDFWVIL 83 +PGL++ LV Y P++G +IAFKD+ F + S+WVG +NF + F+++D ++I Sbjct: 22 LPGLIWLLVLKYIPMFGQIIAFKDFRFHPDGFFASLYHSEWVGLENFQFLFSTNDAFIIT 81 Query: 84 RNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLF 143 RNT++ N++FI+ V A+ +A++ +E+ N+ +I Q+ + P+F+SW+VV V + Sbjct: 82 RNTVLYNVVFIVLGLVLAVAVAIIISELTNQKLAKIYQTGMLFPHFLSWVVVSYFVFTFL 141 Query: 144 GGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLY 203 + + NT L I ++PV W E WPY + I W+G G+ SI++LAAI I Y Sbjct: 142 SIDRGLFNTILSAINIDPVAWYNEPGYWPYFIITISQWKGVGFSSIVYLAAIVAIDRTYY 201 Query: 204 EAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTD 263 EAA IDGASK Q + +T+P+++P I+I+T+L +G IF+ DF + Y + D+ LY T+ Sbjct: 202 EAAIIDGASKWQQIRHVTIPMIMPLIIILTILNIGSIFSADFGLFYQVPRDSGPLYSVTN 261 Query: 264 VIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESALF 314 VIDT+V+R + + D GMS+A GL+Q+ +G + ++ N+I R++ +E+ALF Sbjct: 262 VIDTYVYRGLMTMGDIGMSTAAGLYQATVGFVLILITNYIVRKIDEENALF 312 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 201 bits (512), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 195/308 (63%), Gaps = 8/308 (2%) Query: 6 NASKRSKLKHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSDWV 65 ++ KLK I +N +LY +PGL++FL+F Y P++G++IAF+DY G+TGS+WV Sbjct: 22 KVRRQQKLKRIFRNKYLYLMI--LPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWV 79 Query: 66 GFKNFDYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIF 125 GFK+F+ FT F+ +LRNTLVL + ++F I++A++ NEIR FKR Q++I+ Sbjct: 80 GFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIY 139 Query: 126 LPYFMSWIVVGMIVQSLFGGEEPMINTWLQYIGLEPVNW-MFESKLWP-YILTVIRVWQG 183 +P+FMSW++V + LF + +IN + I + VN+ M E P YIL VI W+ Sbjct: 140 IPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVI--WRE 197 Query: 184 AGYLSIIFLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNG 243 AG+ +II+ AAI I LYEAA++DGA++ + + ITLP + I+++ +L +G I Sbjct: 198 AGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILEL 257 Query: 244 DFAMIYAIIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWI 303 F ++ ++ N+M ++ DT+V+ + + F S+AVG F+SI+GLI V+ ANW+ Sbjct: 258 GFEHVFLML--NAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWL 315 Query: 304 TRRVSKES 311 ++ +E Sbjct: 316 AKKFGEEG 323 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 177/282 (62%), Gaps = 10/282 (3%) Query: 29 VPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSDWVGFKNFDYFFTSDDFWVILRNTLV 88 +P L+ L+F Y P++GI++AF+DY G TGS+WVG ++F F D ++ NTLV Sbjct: 35 IPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLV 94 Query: 89 LNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLFGGEEP 148 +++L ++F + I++AL+ NE+ KR Q++I+LPYF+SW+++G I+ + + Sbjct: 95 ISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGG 154 Query: 149 MINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLYEAARI 208 ++N L G++P+ ++ + + + + +W+ G+ +I+FLAAIT ++ +LYEAA + Sbjct: 155 IVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVV 214 Query: 209 DGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTDVIDTF 268 DGA++ + L ITLP ++P I+++ L++G I N F I+ + N ++Y T D+IDT+ Sbjct: 215 DGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLY--NPLVYQTGDIIDTY 272 Query: 269 VFRSMRQLHDFGMSSAVGLFQSIMGLIFVIT--------ANW 302 V+R DF +AVGLF+S++ L+ +I ANW Sbjct: 273 VYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYANW 314 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 104/289 (35%), Positives = 181/289 (62%), Gaps = 5/289 (1%) Query: 28 AVPGLLFFLVFSYFPIYGIMIAFKDYNFAKGITGSDWVGFKNFDYFFTSDDFWVILRNTL 87 ++P L++ ++F Y P+YG IAF+D+ A+ I DW GFK+F + FT F+ +LRNTL Sbjct: 52 SLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTL 111 Query: 88 VLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLFGGEE 147 ++++ ++ V AI +A++ NE+RN FKR+ Q++ ++P+F+SW+V +V + E Sbjct: 112 AMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIEN 171 Query: 148 PMINTWLQYIGL--EPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLYEA 205 +IN L +G+ EP+ W+ + + I+ VW+ G+ +II+LAAIT I + YEA Sbjct: 172 GIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEA 231 Query: 206 ARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTDVI 265 A IDGA++LQ + ITLP + P I+I+ ++ +G I F Y ++ +M + + + Sbjct: 232 AEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDF--AENL 289 Query: 266 DTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESALF 314 D FV R + +F +++A G+F++++ IF+ +AN I +R+ E+ LF Sbjct: 290 DIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLG-EARLF 337 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.145 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,875,034 Number of extensions: 874851 Number of successful extensions: 3210 Number of sequences better than 1.0e-05: 171 Number of HSP's gapped: 3061 Number of HSP's successfully gapped: 171 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 116 (49.3 bits)