BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0016.p (957 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3594 [L] COG0178 Excinuclease ATPase subunit 1390 0.0 lin2631 [L] COG0178 Excinuclease ATPase subunit 1328 0.0 CAC0503 [L] COG0178 Excinuclease ATPase subunit 1152 0.0 RSc0420 [L] COG0178 Excinuclease ATPase subunit 1051 0.0 Cgl1343 [L] COG0178 Excinuclease ATPase subunit 1046 0.0 >BH3594 [L] COG0178 Excinuclease ATPase subunit Length = 957 Score = 1390 bits (3598), Expect = 0.0, Method: Compositional matrix adjust. Identities = 663/942 (70%), Positives = 792/942 (84%), Gaps = 1/942 (0%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 +NIV+KGAR+HNLKNIDVTIPRD+ VV AFDTIYAEGQRRYVESLSAYA Sbjct: 4 DNIVVKGARSHNLKNIDVTIPRDKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 63 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 RQFLGQM+KPDVDSI+GLSPAISIDQKTTSRNPRSTVGTVTEI+DYLRLL+ARIG P CP Sbjct: 64 RQFLGQMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTVTEIFDYLRLLYARIGKPVCP 123 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDG 183 HGIEI+SQTV+QMVDRI+ Y E+T+LQILAP++SGRKG H + DI KQGFVRVR+DG Sbjct: 124 KHGIEISSQTVQQMVDRILSYEERTKLQILAPLVSGRKGTHVKVLEDIKKQGFVRVRIDG 183 Query: 184 ELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEE 243 E+REV E+I L+KNKKHT +TRL DSLETAL+L+ G+++VDIIG+EE Sbjct: 184 EMREVAEEIELDKNKKHTIEVVIDRIVVKEGIETRLADSLETALQLADGRVVVDIIGKEE 243 Query: 244 LLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEE 303 LLFS ACP CGFSI EL PRMFSFNSPFGACP CDGLG+K+ VD +L+IPD+ +++ E Sbjct: 244 LLFSQHHACPQCGFSIPELEPRMFSFNSPFGACPTCDGLGVKLEVDLELVIPDRSRTLSE 303 Query: 304 GAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYEND 363 A W +S YYPQ L++VC H+GI + PV L + K+L G+G EKI FRYEND Sbjct: 304 NAIAPWEPISSQYYPQMLEAVCNHYGIDMDTPVEQLPDHQLEKILYGSGHEKIFFRYEND 363 Query: 364 FGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTV 423 GQ ++ + FEG+IPN++RRY ET+SD IR+ +E +M+ K C CKG RLKKE LAV + Sbjct: 364 LGQVRENEILFEGVIPNVKRRYHETSSDYIRDQLEAYMAQKACPTCKGHRLKKEALAVLI 423 Query: 424 NDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRA 483 +++ +VT LSI + FF+++ LS+K+ +IA LILKEI+ RLGFL+NVGL+YLTLSR+ Sbjct: 424 GGKHLGEVTKLSIKEAKTFFESLELSKKDFSIARLILKEINDRLGFLMNVGLDYLTLSRS 483 Query: 484 AGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIV 543 AG+LSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTL HMRDLGNTLIV Sbjct: 484 AGTLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLAHMRDLGNTLIV 543 Query: 544 VEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSK 603 VEHDEDTM+AADYIIDIGPGAG+HGGQV A G+P+EIMND SLTG+YLSG+KFIP+ S+ Sbjct: 544 VEHDEDTMLAADYIIDIGPGAGVHGGQVTAAGSPEEIMNDAKSLTGQYLSGKKFIPIPSE 603 Query: 604 RRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNK 663 RR + R ++GA ENNLK VNV+ PLGVF AVTGVSGSGKS+L+NEI++K+LA++L++ Sbjct: 604 RRQPNGRSFTVKGASENNLKQVNVEFPLGVFIAVTGVSGSGKSTLINEIVHKALAQKLHR 663 Query: 664 AVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVR 723 A K +PG+HKEI G+E++DKVIDIDQSPIGRTPRSNPATYTGVFDDIRD+F+ TNEAKVR Sbjct: 664 A-KDKPGKHKEIVGIEHVDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAMTNEAKVR 722 Query: 724 GFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKS 783 G++KGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETL++ YKGK+ Sbjct: 723 GYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLDITYKGKT 782 Query: 784 ISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASEL 843 I+DVL+MTVE+A EFF NIP+I RK+QTL+DVGLGYI +GQP TTLSGGEAQRVKLAS+L Sbjct: 783 IADVLDMTVEEALEFFTNIPRIKRKIQTLVDVGLGYIKLGQPATTLSGGEAQRVKLASQL 842 Query: 844 YRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDM 903 ++R+TGKTLYILDEPTTGLHVDDI RLL+VL R+VD+G++VLVIEHNLDVIKT D++ID+ Sbjct: 843 HKRATGKTLYILDEPTTGLHVDDIDRLLKVLQRIVDNGDTVLVIEHNLDVIKTVDHIIDL 902 Query: 904 GPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTER 945 GPE PE+++EVE SYTGKYL+P+L RD +R Sbjct: 903 GPEGGDKGGTIVAQGTPEEVVEVEGSYTGKYLRPILERDRKR 944 >lin2631 [L] COG0178 Excinuclease ATPase subunit Length = 956 Score = 1328 bits (3436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 634/948 (66%), Positives = 770/948 (81%), Gaps = 2/948 (0%) Query: 1 LANENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLS 60 + E IVI+GARAHNLKNIDV IPRD+ VV AFDTIYAEGQRRYVESLS Sbjct: 1 MDKEKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 61 AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP 120 AYARQFLGQM+KPDVD I+GLSPAISIDQKTTSRNPRSTVGTVTEI+DYLRLL+AR+GHP Sbjct: 61 AYARQFLGQMDKPDVDLIEGLSPAISIDQKTTSRNPRSTVGTVTEIHDYLRLLYARVGHP 120 Query: 121 HCPDHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVR 180 CP+HGIEITSQT+EQMVDR+++YPEKTR+QI+AP++SG+KG HK +I K+G+VR+R Sbjct: 121 VCPNHGIEITSQTIEQMVDRVLEYPEKTRIQIMAPIVSGKKGTHKKTIEEIKKEGYVRIR 180 Query: 181 VDGELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIG 240 VDGE+ ++ ++I +EKNKKH+ TRL DS+E AL+L+ G +V+I+G Sbjct: 181 VDGEIYDINDEIEIEKNKKHSIEIIIDRIVIKEGINTRLYDSIEAALRLADGYAVVEIMG 240 Query: 241 QEELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKS 300 +ELLFS +ACP CGFS+ EL PRMFSFNSPFGACP CDGLG K+ VD D +IPD+ + Sbjct: 241 DKELLFSEHYACPYCGFSVGELEPRMFSFNSPFGACPTCDGLGTKLEVDVDTVIPDRSLT 300 Query: 301 IEEGAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRY 360 + EGA + W +S YYPQ L S C+ FGI + P+ LS E ++ +LNG+ ++ F Y Sbjct: 301 LNEGAIVPWRPISSQYYPQMLASACKEFGIDMDTPIEELSKEALDIVLNGSKDKEFYFEY 360 Query: 361 ENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILA 420 +NDFG ++ + FEGI+PN+ERRYRET SD R+ + +M+ PC CKG RLK+E L+ Sbjct: 361 KNDFGMTRETWIPFEGILPNIERRYRETNSDFTRDQMAQYMTDLPCPSCKGYRLKEETLS 420 Query: 421 VTVNDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTL 480 V VN+ +I +++ SI + L FFD++ LSEKET IA I KE+ +RLGFL NVGL+YLT+ Sbjct: 421 VKVNNHHIGQISEFSINEALDFFDSLELSEKETQIAAPIFKEVRARLGFLKNVGLDYLTM 480 Query: 481 SRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNT 540 SRAAG+LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLI+TL MRD+GNT Sbjct: 481 SRAAGTLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLINTLQSMRDIGNT 540 Query: 541 LIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPV 600 LIVVEHDEDTMMAADY+IDIGPGAG HGG+++A GTP+E+ + NS+TG+YLSG+KFIPV Sbjct: 541 LIVVEHDEDTMMAADYLIDIGPGAGEHGGRIVAAGTPEEVAKNKNSITGDYLSGKKFIPV 600 Query: 601 TSKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQ 660 +KRR + +EI GAK NNLKNVN KIPL F+ VTGVSGSGKSSLVNE+L K+LAR+ Sbjct: 601 PAKRRKGNGLELEIVGAKANNLKNVNAKIPLATFSCVTGVSGSGKSSLVNEVLRKALARK 660 Query: 661 LNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEA 720 LN+ +PG+HKEI+G+ENL+K+I+IDQSPIGRTPRSNPATYTG FDDIRDLF+ TNEA Sbjct: 661 LNRN-HAKPGEHKEIKGIENLEKIINIDQSPIGRTPRSNPATYTGAFDDIRDLFASTNEA 719 Query: 721 KVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 KVRG++KGRFSFNVKGGRCEAC+GDGIIKIEMHFLPDVYVPCEVC GKRYN ETL+++YK Sbjct: 720 KVRGYKKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCHGKRYNGETLDIRYK 779 Query: 781 GKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLA 840 GK+I++VLEMTVE+ E+F N P+I RK+QT++DVGLGYI +GQP TTLSGGEAQRVKLA Sbjct: 780 GKNIAEVLEMTVEEGLEYFTNQPRIARKLQTIVDVGLGYIRLGQPATTLSGGEAQRVKLA 839 Query: 841 SELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLV-DSGESVLVIEHNLDVIKTADY 899 SEL++RS GK+ YILDEPTTGLH DDIGRLL+VL RLV ++G++VLVIEHNLDVIK ADY Sbjct: 840 SELHKRSNGKSFYILDEPTTGLHADDIGRLLKVLQRLVEENGDTVLVIEHNLDVIKQADY 899 Query: 900 LIDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTK 947 LID+GPE PEKI ++SYTGKYLKP+L RD ERT+ Sbjct: 900 LIDLGPEGGDGGGQIIATGTPEKIARSKKSYTGKYLKPILERDKERTE 947 >CAC0503 [L] COG0178 Excinuclease ATPase subunit Length = 939 Score = 1152 bits (2980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/940 (59%), Positives = 720/940 (76%), Gaps = 7/940 (0%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 + IVIKGA+ HNLKN+D+T+PR+ FVV AFDT+YAEGQRRY+ESLS+YA Sbjct: 3 DKIVIKGAKVHNLKNVDLTVPRNEFVVFTGLSGSGKSSLAFDTLYAEGQRRYMESLSSYA 62 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 RQFLGQM+KP+V+ I+GLSPAISIDQKTT RNPRSTVGTVTEIYDYLRLL+A+IG PHCP Sbjct: 63 RQFLGQMDKPNVEYIEGLSPAISIDQKTTGRNPRSTVGTVTEIYDYLRLLYAKIGVPHCP 122 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDG 183 + G EI+ QTV+Q+VD +M+ E+T++Q+LAPV+ GRKGEH L + I K GFVRVR+DG Sbjct: 123 NCGKEISQQTVDQIVDSVMKLEERTKIQVLAPVVRGRKGEHTKLIAHIKKSGFVRVRIDG 182 Query: 184 ELREVTED-IVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQE 242 E+ E+ ED I L+KNKKH + RLTDS+ETALKL+ G ++++++G+E Sbjct: 183 EVYEIDEDEIKLDKNKKHHIEALVDRIVIKQGVEGRLTDSVETALKLAEGLVVINVMGKE 242 Query: 243 ELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIE 302 ++LFS +FACP CG SI E++P MFSFN+PFG C CDG+G + +D DL+IPD+ KSI Sbjct: 243 DMLFSENFACPDCGISIGEISPSMFSFNAPFGKCDVCDGIGTLLEIDEDLVIPDKSKSIM 302 Query: 303 EGAFLAWTG---STSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFR 359 EGA W ++ LK++ + + + N P+ + +N LL G + ++ Sbjct: 303 EGAIAPWGEGRLKEESWTFGVLKALSKKYKLDINKPIEDYDEKTLNILLYG-APDVLKVN 361 Query: 360 YENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEIL 419 Y D Q +EGII ++RRY E+ SD I+ IE +MS PC CKG RLKKE+L Sbjct: 362 YVKD-SQEMVFNHHYEGIINQMKRRYMESNSDYIKSEIENYMSNNPCPKCKGARLKKEVL 420 Query: 420 AVTVNDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLT 479 A+TV ++NI + + I + + F D + LS K I+ I+KEI SRL FL+NVGL+YL Sbjct: 421 AITVGNKNIFEFCSMPIREEVSFIDTLELSNKHKIISAQIVKEIKSRLEFLINVGLDYLN 480 Query: 480 LSRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGN 539 L+R A +LSGGE+QRIRLATQIGSSL+GVLYILDEPSIGLHQRDNDRLI+T+ +++D+GN Sbjct: 481 LAREARTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIATMKNLKDIGN 540 Query: 540 TLIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIP 599 TLIVVEHDEDT+ AAD+I+DIGPGAG HGG+++A G+ ++I N S+TG+YL+G K I Sbjct: 541 TLIVVEHDEDTIKAADFIVDIGPGAGEHGGEIIAAGSLEDIKNCKESITGQYLTGVKKIE 600 Query: 600 VTSKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLAR 659 V +RR +IEI GAKENNLKNVNVK P+G+FT VTGVSGSGKS+LVNEILYK+L + Sbjct: 601 VPKERREAGKNFIEIVGAKENNLKNVNVKFPVGLFTCVTGVSGSGKSTLVNEILYKALNK 660 Query: 660 QLNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNE 719 ++N++ K+ PG++K I G+EN+DK+IDI+QSPIGRTPRSNPATYTGVFD IR+L++ T E Sbjct: 661 KINRS-KLNPGKYKSINGIENIDKIIDINQSPIGRTPRSNPATYTGVFDIIRELYASTKE 719 Query: 720 AKVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKY 779 AK+RG++ GRFSFNVKGGRCEAC+GDGI++IEM FL DVYVPC+VCKGKRYNRETLE+KY Sbjct: 720 AKLRGYKAGRFSFNVKGGRCEACKGDGIVRIEMQFLSDVYVPCDVCKGKRYNRETLEIKY 779 Query: 780 KGKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKL 839 K K+I D+L MTVEDA +FF+N+P+I K+QTL DVGLGY+ +GQP T LSGGEAQR+KL Sbjct: 780 KDKNIDDLLNMTVEDALKFFENLPRIKNKLQTLADVGLGYVRLGQPSTQLSGGEAQRIKL 839 Query: 840 ASELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADY 899 A EL +RSTGKTLYILDEPTTGLH DD+ +L+ +L RL D G +V+VIEHNLDVIK ADY Sbjct: 840 AYELSKRSTGKTLYILDEPTTGLHTDDVKKLISILQRLTDMGNTVVVIEHNLDVIKCADY 899 Query: 900 LIDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVL 939 ++D+GPE PE++ + SYTG+YLK +L Sbjct: 900 IVDLGPEGGEKGGTILCSGTPEQVAQNSSSYTGQYLKKML 939 >RSc0420 [L] COG0178 Excinuclease ATPase subunit Length = 954 Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/954 (55%), Positives = 677/954 (70%), Gaps = 18/954 (1%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 E I I+GAR HNLKNI++ +PR++ VV AFDT+YAEGQRRYVESLSAYA Sbjct: 2 EAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 RQFL MEKPDVD I+GLSPAISI+QK TS NPRSTVGTVTEI+DYLRLL+AR G P+CP Sbjct: 62 RQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCP 121 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRV-- 181 +HG + +Q+V QMVD ++ P T+L ILAPV++ RKGEH LF + QGFVR R+ Sbjct: 122 EHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKGEHVDLFEAMQAQGFVRFRIRS 181 Query: 182 --------DGELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQ 233 + ++ EV L+KN KH + RL +S ETAL+L+ G+ Sbjct: 182 GGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADGR 241 Query: 234 IL-VDIIGQEELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDL 292 L +++ +E +FSS FACP+C +S+ EL PR+FSFN+P GACP CDGLG DP Sbjct: 242 ALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKR 301 Query: 293 LIPDQEKSIEEGAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTG 352 ++ S+ GA W + +Y Q L+S+ + + P L E + +L G+G Sbjct: 302 VVAFPNLSLASGAIKGWD-RRNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSG 360 Query: 353 SEKIRFRYENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGK 412 ++I F Y N+ G+ AFEGIIPNLERRY+ET S +RE + + + + C C+G Sbjct: 361 KQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIAVREELAKYQNNQACPECEGT 420 Query: 413 RLKKEILAVTVND----RNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLG 468 RL++E V + D R I ++ + D L +F + L + IA I++EI+SRL Sbjct: 421 RLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN 480 Query: 469 FLVNVGLNYLTLSRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLI 528 FL NVGL+YL+L R+A +LSGGEAQRIRLA+QIGS L GV+Y+LDEPSIGLHQRDNDRLI Sbjct: 481 FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLI 540 Query: 529 STLGHMRDLGNTLIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLT 588 TL H+RDLGN+++VVEHDED + A+D+++DIGPGAG+HGGQ++A+GTP++I P SLT Sbjct: 541 GTLKHLRDLGNSVLVVEHDEDMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLT 600 Query: 589 GEYLSGRKFIPVTSKRRATDD-RWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSS 647 GEYLSG++ I V +R A D+ RW+ I A NNLK+VN IP+G+ T VTGVSGSGKS+ Sbjct: 601 GEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNADIPVGLLTCVTGVSGSGKST 660 Query: 648 LVNEILYKSLARQLNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVF 707 L+N+ LY ++AR L + P H I GLE+ DKVI++DQSPIGRTPRSNPATYTG+F Sbjct: 661 LINDTLYNAVARHLYGSTP-EPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLF 719 Query: 708 DDIRDLFSKTNEAKVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKG 767 IR+L++ AK RG+ GRFSFNVKGGRCEAC+GDG++K+EMHFLPDVYVPC+VC G Sbjct: 720 TPIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHG 779 Query: 768 KRYNRETLEVKYKGKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGT 827 KRYNRETLEV YKGK+I++VLEMTVE A EFF +P + RK+QTLLDVGLGYI +GQ T Sbjct: 780 KRYNRETLEVLYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSAT 839 Query: 828 TLSGGEAQRVKLASELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVI 887 TLSGGEAQRVKL+ EL +R TG+TLYILDEPTTGLH DI LL+V+H+L D G +V++I Sbjct: 840 TLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGNTVVII 899 Query: 888 EHNLDVIKTADYLIDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIR 941 EHNLDVIKTAD+L+D+GPE PE++ + S+TGKYL P+L R Sbjct: 900 EHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKR 953 >Cgl1343 [L] COG0178 Excinuclease ATPase subunit Length = 949 Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/950 (55%), Positives = 689/950 (72%), Gaps = 17/950 (1%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 + +V++GAR HNLK +D+ +PRD VV AFDTI+AEGQRRYVESLS+YA Sbjct: 3 DRLVVRGAREHNLKGVDIDLPRDSMVVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYA 62 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 R FLGQM+KPDVD IDGLSPA+SIDQK+T+RNPRSTVGT+TE+YDYLRLL+AR G HCP Sbjct: 63 RMFLGQMDKPDVDLIDGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTAHCP 122 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDG 183 + QT +QMVD+I+ E + QILAPV+ RKGE LF+D++ QG+ RVRVDG Sbjct: 123 VCDARVERQTPQQMVDQILGMEEGLKFQILAPVVRTRKGEFVDLFADLASQGYSRVRVDG 182 Query: 184 ELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEE 243 E+ ++++ LEK KH + RLTDS+ETAL+L+ G +++ +G EE Sbjct: 183 EVHQLSDPPKLEKQIKHDIDVVVDRLQVKASQKQRLTDSMETALRLADGVAVLEFVGLEE 242 Query: 244 ------LLFSSSFACPVC-GFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPD 296 FS +CP +++EL PR FSFNSP+GACP CDGLG++ VD DL+IPD Sbjct: 243 DDPNRLRRFSEKMSCPNGHALTVDELEPRAFSFNSPYGACPACDGLGVRTEVDIDLIIPD 302 Query: 297 QEKSIEEGAFLAWTGSTSN-YYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEK 355 + + A W S ++ Y+ + ++ + + G P S L+ L+ G+ E+ Sbjct: 303 PDAPATK-AVQPWNSSPNHSYFEKLIEGLAKALGFDPETPYSELTAAQKKALVYGS-KEE 360 Query: 356 IRFRYENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLK 415 + RY+N +G+ + FEG++ +R+ +T S+ ++ + G+ PC CKG RLK Sbjct: 361 VSVRYKNRYGRVRSWTAPFEGVMGYFDRKLEQTDSETQKDRLLGYTREVPCPTCKGARLK 420 Query: 416 KEILAVTVND-----RNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFL 470 EILAV ++ +IA +T LS+ + +F DN+ L ++E IA +LKEI +RL FL Sbjct: 421 PEILAVRLDSGSHGALSIAGLTALSVHEAFEFLDNLTLGKREEMIAGAVLKEIHARLKFL 480 Query: 471 VNVGLNYLTLSRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLIST 530 ++VGL+YLTL RAAG+LSGGEAQRIRLATQIGS L GVLY+LDEPSIGLHQRDN RLI+T Sbjct: 481 LDVGLSYLTLDRAAGTLSGGEAQRIRLATQIGSGLAGVLYVLDEPSIGLHQRDNQRLITT 540 Query: 531 LGHMRDLGNTLIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGE 590 L H+RD+GNTLIVVEHDEDT+ AD+++DIGP AG GG+V+ QG PK I++ SLTG Sbjct: 541 LEHLRDIGNTLIVVEHDEDTIRRADWLVDIGPRAGEFGGEVVYQGEPKGILDCEESLTGA 600 Query: 591 YLSGRKFIPVTSKRRATD-DRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLV 649 YLSGR+ + V RR D +R +++ GA+ENNL+ ++VKIPLGV +TGVSGSGKS+LV Sbjct: 601 YLSGRRTLGVPDTRREIDKERQLKVVGARENNLQGIDVKIPLGVLCCITGVSGSGKSTLV 660 Query: 650 NEILYKSLARQLNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDD 709 N+IL K LA +LN+A +V PG+ K + GLE+LDK++ +DQSPIGRTPRSNPATYTGVFD Sbjct: 661 NQILAKVLANKLNRARQV-PGRAKRVEGLEHLDKLVQVDQSPIGRTPRSNPATYTGVFDK 719 Query: 710 IRDLFSKTNEAKVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKR 769 +R+LF++T EAKVRG++ GRFSFN+KGGRCEAC+GDG +KIEM+FLPDVYVPCEVC G+R Sbjct: 720 VRNLFAETTEAKVRGYKPGRFSFNIKGGRCEACQGDGTLKIEMNFLPDVYVPCEVCDGQR 779 Query: 770 YNRETLEVKYKGKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTL 829 YNRETLEVKYKGK+I++VL M + +A +FF+ I IHR + TL+DVGLGY+ +GQ TTL Sbjct: 780 YNRETLEVKYKGKNIAEVLGMPISEAADFFEPITSIHRYLATLVDVGLGYVRLGQAATTL 839 Query: 830 SGGEAQRVKLASELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEH 889 SGGEAQRVKLA+EL +RS G+T+YILDEPTTGLH +DI +L+ V+ LVD G SV++IEH Sbjct: 840 SGGEAQRVKLAAELQKRSNGRTVYILDEPTTGLHFEDIRKLMMVIEGLVDKGNSVIIIEH 899 Query: 890 NLDVIKTADYLIDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVL 939 NLDVIK AD+++DMGPE PE++ EV SYTG++LK +L Sbjct: 900 NLDVIKAADWIVDMGPEGGSGGGTVVAEGTPEQVAEVAGSYTGQFLKELL 949 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 68,190,689 Number of extensions: 2945781 Number of successful extensions: 22777 Number of sequences better than 1.0e-05: 57 Number of HSP's gapped: 23555 Number of HSP's successfully gapped: 82 Length of query: 957 Length of database: 38,378,431 Length adjustment: 116 Effective length of query: 841 Effective length of database: 24,999,687 Effective search space: 21024736767 Effective search space used: 21024736767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)