BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0014.p (261 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1460 [N] COG1291 Flagellar motor component 185 7e-47 CAC0304 [N] COG1291 Flagellar motor component 183 3e-46 BS_ytxD [N] COG1291 Flagellar motor component 173 2e-43 CAC1846 [N] COG1291 Flagellar motor component 169 6e-42 BS_motA [N] COG1291 Flagellar motor component 157 1e-38 >PA1460 [N] COG1291 Flagellar motor component Length = 246 Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 149/246 (60%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 MD+ S++ F EGG LL AALIV GGTLAA ++ P + L+ Sbjct: 1 MDVLSLVGIILAFVAIVGGNFLEGGHAGALLNGPAALIVIGGTLAAALLQTPVNVLKRGL 60 Query: 61 AALRLAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGTD 120 L F + + ++S + R+ G+L LE A+ PDP+ +GL L+VDG + Sbjct: 61 GMLGWVFFPPREDLSGGIDRIVSWSMTARKEGLLGLESIADAEPDPYARKGLQLLVDGAE 120 Query: 121 PEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLGA 180 PE +R ILE+++ +E + AK+FE+ GGYAPT+GIIG VMGLI V+ NL +P+ LG+ Sbjct: 121 PEVIRSILEVDLFTQESRDLQAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLANPAQLGS 180 Query: 181 SIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKK 240 IAVAF AT+YGV ANL+ LPI +K+K+ + EML+ G+L++ G++P+ + K Sbjct: 181 GIAVAFVATIYGVGFANLLLLPIGNKLKTLVLRQSRYREMLLEGLLSIAEGENPRSIELK 240 Query: 241 LRSFLN 246 L+ F++ Sbjct: 241 LQGFMD 246 >CAC0304 [N] COG1291 Flagellar motor component Length = 262 Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 151/230 (65%), Gaps = 2/230 (0%) Query: 20 FFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVPAALRLAFGRHADTTEEQAE 79 F +GGS+ L+ ++ A+IVFGGT+ AV SFP ++ + + +++A + Sbjct: 18 FIIDGGSVINLIHVSPAIIVFGGTIGAVGTSFPIGDIKKLGSIVKVALSKPKSDLPALIA 77 Query: 80 ELISMAAVTRRSGVLALEKR-AEEHPDPFTGEGLMLIVDGTDPEQVRQILELEMDAKELK 138 +A TR+ G+L++E+ ++E DPF +GL ++VDG +P+ V+ LEL ++ E + Sbjct: 78 YFKQIAFKTRKEGLLSIEEMISDESVDPFIKKGLQMVVDGIEPQTVKDTLELSVELIEER 137 Query: 139 YEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNL-TDPSNLGASIAVAFTATLYGVASAN 197 + A IF+AAGGYAPT+GIIGTV L+ VL+NL +D S LG SI+ AF ATLYG++SAN Sbjct: 138 HNMGASIFQAAGGYAPTLGIIGTVCSLVVVLANLSSDTSQLGESISSAFLATLYGISSAN 197 Query: 198 LIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRKKLRSFLNR 247 L++LPIA+K+K + E+ +++ IL +Q G +P + +KL+ FL++ Sbjct: 198 LVYLPIANKLKRYNAIEIQEKNLIIEAILCIQEGINPNTLDEKLKGFLDK 247 >BS_ytxD [N] COG1291 Flagellar motor component Length = 272 Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 144/229 (62%) Query: 30 LLQLNAALIVFGGTLAAVMVSFPASRLRSVPAALRLAFGRHADTTEEQAEELISMAAVTR 89 L L + IV GG AAV +SFP S L+ P+ L+ AF R D ++ + +S++ R Sbjct: 35 FLDLTSFFIVTGGLCAAVFISFPPSELKKAPSVLKQAFIRQEDNVKDLVKTFVSLSDHAR 94 Query: 90 RSGVLALEKRAEEHPDPFTGEGLMLIVDGTDPEQVRQILELEMDAKELKYEGYAKIFEAA 149 + G+L+L+ +A E DPF +GL+L +DG D E +R +++ E+ A E ++ ++FE A Sbjct: 95 KHGLLSLDDQAREIKDPFLKKGLLLAIDGWDEETIRLVMDSEIAAMEERHRKGRRVFEKA 154 Query: 150 GGYAPTMGIIGTVMGLIRVLSNLTDPSNLGASIAVAFTATLYGVASANLIFLPIASKIKS 209 G +AP G+IGT++GL+ +L NL DP LG ++A+A TLYG AN++F PIA+K++ Sbjct: 155 GEFAPAWGMIGTLVGLVLMLKNLNDPHMLGPNMAIALLTTLYGSLLANMVFNPIAAKLEE 214 Query: 210 RSQSELGSMEMLMVGILALQNGDHPQLVRKKLRSFLNRSAEERSTGNTR 258 +++SE+ ++++ GI+ +Q+G +P+ + +L F +R ++ + Sbjct: 215 KTESEIFIKQVMVEGIIGVQSGKNPRNLESQLVVFSSREEWQKQPKQVK 263 >CAC1846 [N] COG1291 Flagellar motor component Length = 259 Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 152/260 (58%), Gaps = 3/260 (1%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 MDI +I +G +++ LL AA+I+ GT AAVM SFP + ++P Sbjct: 1 MDIFLVIGIITGLLAVVVGMIVKGANVAVLLNPAAAIIIIVGTSAAVMNSFPKNEFTNIP 60 Query: 61 AALR-LAFGRHADTTEEQAEELISMAAVTRRSGVLALEKRAEEHPDPFTGEGLMLIVDGT 119 + L G+ + E +++ MA TR++G+L+LE + + F GL ++VDG Sbjct: 61 KVFKSLMRGKSKEDPVEIINQIVDMAQETRKNGLLSLEGKIHSIDNEFLKTGLEMVVDGV 120 Query: 120 DPEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPSNLG 179 DP+ + ++LE+E+++ E ++ G A IF AGG APT+G++G V+GLI L NL D LG Sbjct: 121 DPQHIAEVLEMEIESTEERHRGGALIFTTAGGAAPTLGVLGAVVGLIGALGNLNDTEKLG 180 Query: 180 ASIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQLVRK 239 IA AF ATLYG+ +I P AS++K +S E+ M ++ GIL +Q+G++P+ + K Sbjct: 181 HMIAGAFVATLYGIFFGYVICHPFASRLKRKSLEEINVMRIITEGILDIQSGNNPKSIEK 240 Query: 240 KLRSFLNRSAEERSTGNTRG 259 KL L S ++R + ++G Sbjct: 241 KLIGTL--SPKQRQSIQSKG 258 >BS_motA [N] COG1291 Flagellar motor component Length = 270 Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 143/249 (57%), Gaps = 7/249 (2%) Query: 1 MDITSIIXXXXXXXXXXXXFFWEGGSLSGLLQLNAALIVFGGTLAAVMVSFPASRLRSVP 60 MD TS+I +G S S L A LI+ GT++AV+++FP ++ VP Sbjct: 1 MDKTSLIGIILAFVALSVGMVLKGVSFSALANPAAILIIIAGTISAVVIAFPTKEIKKVP 60 Query: 61 AALRLAFGRHADTTEEQAEELISM----AAVTRRSGVLALEKRAEEHPDPFTGEGLMLIV 116 R+ F + T EELI M A + RR G+LALE E+ D F GL + V Sbjct: 61 TLFRVLFKENKQLT---IEELIPMFSEWAQLARREGLLALEASIEDVDDAFLKNGLSMAV 117 Query: 117 DGTDPEQVRQILELEMDAKELKYEGYAKIFEAAGGYAPTMGIIGTVMGLIRVLSNLTDPS 176 DG E +R I+ E++A E +++ A IF AG YAPT+G++G V+GLI LS++ + Sbjct: 118 DGQSAEFIRDIMTEEVEAMEDRHQAGAAIFTQAGTYAPTLGVLGAVIGLIAALSHMDNTD 177 Query: 177 NLGASIAVAFTATLYGVASANLIFLPIASKIKSRSQSELGSMEMLMVGILALQNGDHPQL 236 LG +I+ AF ATL G+ + +++ P A+K+K +S+ E+ E+++ G+L++ G P++ Sbjct: 178 ELGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKQEVKLREVMIEGVLSVLEGQAPKV 237 Query: 237 VRKKLRSFL 245 + +KL +L Sbjct: 238 IEQKLLMYL 246 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,206,185 Number of extensions: 666342 Number of successful extensions: 2660 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 2655 Number of HSP's successfully gapped: 9 Length of query: 261 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 157 Effective length of database: 26,383,695 Effective search space: 4142240115 Effective search space used: 4142240115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)