BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0001.p (220 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0240 [TK] COG2197 Response regulator containing a CheY-like r... 218 7e-57 CAC2939 [TK] COG2197 Response regulator containing a CheY-like r... 202 3e-52 CAC0865 [TK] COG2197 Response regulator containing a CheY-like r... 195 4e-50 all4635 [TK] COG2197 Response regulator containing a CheY-like r... 190 1e-48 CAC1455 [TK] COG2197 Response regulator containing a CheY-like r... 190 1e-48 >CAC0240 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 208 Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 110/213 (51%), Positives = 151/213 (70%), Gaps = 6/213 (2%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 +KV+IVDDD+ IRESL +L+ L+ EIE+ G+ +G+EA + D+VLMDIRMP Sbjct: 1 MKVLIVDDDALIRESLSILLDLEDEIEIIGTCANGQEAFDFCKN-NRPDIVLMDIRMPIM 59 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV GTK IKE++ I V++LTTF DDEYI EAL+NGA GY+LKN D II +K V Sbjct: 60 DGVLGTKVIKESFKDIKVVILTTFKDDEYIKEALKNGAEGYILKNQSSDSIIDSLKAVVN 119 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++ ++A+ ++ F++ ++ LE Y LT+ E+ V+ I +G +NKEIA++L Sbjct: 120 GNMVFEQNVAKTISNFIK-----EDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKL 174 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKN 214 +LSEGTV+NYIT +L KL LRDRTQ+AIFY KN Sbjct: 175 YLSEGTVRNYITSLLEKLELRDRTQLAIFYLKN 207 >CAC2939 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 215 Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 102/214 (47%), Positives = 147/214 (68%), Gaps = 4/214 (1%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 I VVI DD+ IR+ LK+++ + EI V G A +G EA + ++ DVVL DIRMP C Sbjct: 4 INVVIADDEKLIRDGLKIILNANDEINVIGVAENGIEAAEICKR-EKVDVVLTDIRMPVC 62 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV+ TK IK + I VL+LTTF DDEYI EA++NGA+GY+LK+ + II +K+V++ Sbjct: 63 DGVKATKIIKNQFSDIKVLVLTTFKDDEYIFEAMKNGANGYILKDTSYEIIIDAVKSVYK 122 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++++P+IA K+ + +P + E Y LT ++ ++ I G +NKEIA + Sbjct: 123 GNVVVNPEIASKMVSGVMKTSPSSNEIK---EKYKLTDRQIEIIIAIGSGLSNKEIAEKQ 179 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 +++EGTVKN+IT+ILSKL +RDRTQIAIF KN+ Sbjct: 180 YVTEGTVKNHITEILSKLEMRDRTQIAIFALKNE 213 >CAC0865 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 218 Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 146/214 (68%), Gaps = 2/214 (0%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 IKVVIVDD+ + + LK+++ +I+V G+A +G EAL + Q DVVLMDIRMP C Sbjct: 4 IKVVIVDDEKLVVDGLKIILETYEDIKVVGTAKNGEEALRVCRQ-SSPDVVLMDIRMPKC 62 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV GTK IK+ + I +L+LTTF+D +YI EAL+ GASGY+LK+ + I +GIK + Sbjct: 63 DGVLGTKLIKKEFKDIKILILTTFNDVKYIHEALKYGASGYILKDSDYELIYEGIKAAFK 122 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++I+P++A K+ ++A+ + Y L+ E+ +V IA G +NKEIA +L Sbjct: 123 GNVVINPEVASKILS-ENGEYNKEQALEEVKTKYDLSDKEINIVREIASGLSNKEIAEKL 181 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 FLSEGT+KN I+ I SKL LRDRTQ+ IF +KN Sbjct: 182 FLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNN 215 >all4635 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 219 Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 142/210 (67%), Gaps = 3/210 (1%) Query: 1 MIKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPN 60 MIKV++VDD + IR+ L+ L+ L+P+IE+ G A +G+ A+ L+ Q H DVVLMD+RMP Sbjct: 1 MIKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQF-HPDVVLMDMRMPI 59 Query: 61 CDGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVH 120 DGV T+ I++ +P + VL+LTTFDDDEY+ AL++GA GYLLK+ P + + I+ V Sbjct: 60 MDGVAATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVE 119 Query: 121 EGNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAE 180 +G + P I +KL +Q + P P LT E V+ LIA G N+EIA + Sbjct: 120 KGYTQLGPGIVKKL--LVQFQSTPNHTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQ 177 Query: 181 LFLSEGTVKNYITDILSKLGLRDRTQIAIF 210 L++SEGTVKN++T+IL++L LRDRTQ AI Sbjct: 178 LYISEGTVKNHVTNILNRLNLRDRTQAAII 207 >CAC1455 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/212 (46%), Positives = 142/212 (66%), Gaps = 3/212 (1%) Query: 1 MIKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPN 60 MIKV+I DD IR+SLK++++ + +IE+ G+A +G E + + + DV+LMD+RMP Sbjct: 1 MIKVLIADDQELIRQSLKIVLSANKDIEIVGTACNGNEVVESVRKY-KPDVILMDVRMPE 59 Query: 61 CDGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVH 120 DGV+ TK IKE+YP I +++LTTFDDDEYI AL+ GASGYLLK + D +++ I TV Sbjct: 60 MDGVQCTKVIKESYPNIKIIVLTTFDDDEYIFNALKYGASGYLLKGVSMDELVRAIHTVV 119 Query: 121 EGNLLIHPDIARKLAG-FLQPAAPPKEAMPKTLEGY-GLTKAELAVVSLIAEGHTNKEIA 178 G +I+PDI K+ F Q A T + + AE ++ + G +NKEIA Sbjct: 120 NGGAMINPDITAKVFKLFSQMAQGDISIQAGTKKNTDDICDAEWNIIKCVGFGLSNKEIA 179 Query: 179 AELFLSEGTVKNYITDILSKLGLRDRTQIAIF 210 +L LSEGTV+NY+++IL+KL RDRTQ+AI+ Sbjct: 180 KKLRLSEGTVRNYLSNILNKLNFRDRTQLAIW 211 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,410,172 Number of extensions: 681451 Number of successful extensions: 2524 Number of sequences better than 1.0e-05: 309 Number of HSP's gapped: 2423 Number of HSP's successfully gapped: 309 Length of query: 220 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 118 Effective length of database: 26,614,363 Effective search space: 3140494834 Effective search space used: 3140494834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)