BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0118.0006.p
         (201 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yutG [I] COG1267 Phosphatidylglycerophosphatase A and related...   201   4e-52
BH3424 [I] COG1267 Phosphatidylglycerophosphatase A and related ...   181   5e-46
BS_ypjQ [I] COG1267 Phosphatidylglycerophosphatase A and related...   152   4e-37
BH1441 [I] COG1267 Phosphatidylglycerophosphatase A and related ...   139   4e-33

>BS_yutG [I] COG1267 Phosphatidylglycerophosphatase A and related proteins
          Length = 346

 Score =  201 bits (512), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 7/146 (4%), Positives = 22/146 (15%)

Query: 25  LHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVLTGIQLDVLAEE 84
           L       +                      V  +  V  + E Q    T +   +    
Sbjct: 18  LGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHG 77

Query: 85  GKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPGVLERLNDKSTG 144
            +    +   +               ++          +     +     L +++     
Sbjct: 78  SREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRP 137

Query: 145 QIHTYLDDXXXXXXXXXXXXXXHRKQ 170
                                     
Sbjct: 138 TNCFGKLGYSWTDSAPAVSLLDTLDA 163


>BH3424 [I] COG1267 Phosphatidylglycerophosphatase A and related proteins
          Length = 346

 Score =  181 bits (460), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 6/129 (4%), Positives = 15/129 (11%)

Query: 24  WLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVLTGIQLDVLAE 83
                G               +    +     + +V  +                     
Sbjct: 14  STLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWL 73

Query: 84  EGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPGVLERLNDKST 143
                     +          ++        +             K        L     
Sbjct: 74  AKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHW 133

Query: 144 GQIHTYLDD 152
            Q  T    
Sbjct: 134 PQRPTNCFG 142


>BS_ypjQ [I] COG1267 Phosphatidylglycerophosphatase A and related proteins
          Length = 346

 Score =  152 bits (384), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 10/174 (5%), Positives = 28/174 (16%), Gaps = 3/174 (1%)

Query: 10  YSLNSKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQ 69
           + +     +   +          E+ +E     Q  Y     +          +  R   
Sbjct: 4   HRIP--HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61

Query: 70  NAVLTGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDK 129
             +      + LA+ G     +     +  S      I     ++        +      
Sbjct: 62  QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121

Query: 130 LKPGVLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHRKQAEREQELGQPHAP 183
               +                                        +        
Sbjct: 122 QTDYLDLYQVHWPQR-PTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIR 174


>BH1441 [I] COG1267 Phosphatidylglycerophosphatase A and related proteins
          Length = 346

 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 9/139 (6%), Positives = 27/139 (19%), Gaps = 1/139 (0%)

Query: 14  SKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVL 73
                E +T  L       +                      V  +  V  + E Q    
Sbjct: 7   PHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTE 66

Query: 74  TGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPG 133
           T +   +     +    +   +               ++          +     +    
Sbjct: 67  TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYL 126

Query: 134 VLERLNDKSTGQIHTYLDD 152
            L +++       + +   
Sbjct: 127 DLYQVHWPQR-PTNCFGKL 144


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,836,644
Number of extensions: 541990
Number of successful extensions: 719
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 4
Length of query: 201
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 100
Effective length of database: 26,729,697
Effective search space: 2672969700
Effective search space used: 2672969700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)