BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0014.p (330 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 248 1e-65 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 236 4e-62 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 215 7e-56 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 206 6e-53 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 202 6e-52 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 36 LLAQRHLQTMALLGVVWMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLEHFREFLDDE 95 L Q++L M+L V W+++FNY P++G ++F+ + S E WVGL+HF E D Sbjct: 24 LKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDN 83 Query: 96 DLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPHFLSWVVLGG 155 V++NTL +S++ L++GF +PI+FA+ LNE+R + +K+ +QT+SYLPHF+SWVV+ G Sbjct: 84 RFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAG 143 Query: 156 ILATWLA-DVGIVNNILLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWSAIIYLAAI 214 I+ L+ D GIVN +L++ +DQP+ ++A+ +FW I+ SD+WKE+GW++II+LAA+ Sbjct: 144 IVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAM 203 Query: 215 SGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQILVLRNSL 274 +G+ P++YEAA +DGA R++++W +TLP I+ TI ++ IL++ ++ F++ +L N L Sbjct: 204 AGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPL 263 Query: 275 NDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKINDTSL 329 S V+D Y G+ R+SY N + K+ + S+ Sbjct: 264 VVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 193/335 (57%), Gaps = 5/335 (1%) Query: 1 MMENKSSTEANPAMKPL---LSPKIETG-PGPKSPLWRRLLAQRHLQTMALLGVVWMIIF 56 + + +SS A P PK G P +++ Q+ L M+L ++W+IIF Sbjct: 3 LQQTQSSAPPGQASSPAPIKQPPKTPAGKPTGIKLFFKKCYEQKALLLMSLPFLIWLIIF 62 Query: 57 NYIPMYGLIISFKEYNIVRSIAEAPWVGLEHFREFLDDEDLVNVIKNTLGISLIKLLIGF 116 Y+P+YG I+F+++ R I + W G +HF D V++NTL +SLI L++GF Sbjct: 63 RYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGF 122 Query: 117 PLPIIFALFLNEIRSLRYKKAIQTISYLPHFLSWVVLGGILATWLA-DVGIVNNILLSLH 175 I A+ LNE+R+L +K+ +QTISY+PHFLSWVV G+++ L+ + GI+N +L+ L Sbjct: 123 VTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLG 182 Query: 176 LIDQPITYLAEPSYFWTIIISSDIWKELGWSAIIYLAAISGVSPEMYEAATIDGAGRFQK 235 +I +PI +L YFW II +SD+WK +GW+ IIYLAAI+ + E YEAA IDGA R Q+ Sbjct: 183 MISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRLQR 242 Query: 236 MWFVTLPAIKSTISILFILAVSGVLNSNFDQILVLRNSLNDSASNVIDYYIYYTGIVSNR 295 +W++TLP ++ I IL I+ + +L S F+ +L N +N + +D ++ GI Sbjct: 243 IWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGINMGN 302 Query: 296 FSYSXXXXXXXXXXXXXXXXXXNQVSKKINDTSLF 330 FS + N ++K++ + LF Sbjct: 303 FSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 215 bits (548), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 109/280 (38%), Positives = 175/280 (62%), Gaps = 3/280 (1%) Query: 52 WMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLEHFREFLDDEDLVNVIKNTLGISLIK 111 + +IF Y+PM+G++I+FK+Y+ ++ WVG ++F++F + D +++NTL ++ + Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 112 LLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPHFLSWVVLGGILATWLA-DVGIVNNI 170 LL FP P+I AL LNE+R YK+ IQT Y+PHF+SW ++ I + D G++N + Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 171 LLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWSAIIYLAAISGVSPEMYEAATIDGA 230 ++SL + I++L++ +F +I+ IWKE GW I++LAA++ V E YEAA +DGA Sbjct: 161 IMSL--TGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGA 218 Query: 231 GRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQILVLRNSLNDSASNVIDYYIYYTG 290 GRF++MW +TLPAI+STI +L IL + LN F+Q+ ++ NSLN S +++ D Y+Y G Sbjct: 219 GRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMG 278 Query: 291 IVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKINDTSLF 330 I +SYS N ++KK + LF Sbjct: 279 ITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 206 bits (523), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 172/295 (58%), Gaps = 3/295 (1%) Query: 32 LWRRLLAQRHLQTMALLGVVWMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLEHFREF 91 LW R+ Q+ L M + G+V IF YIPMYG++I+FK+YN ++ I + W+G F +F Sbjct: 10 LWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKF 69 Query: 92 LDDEDLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPHFLSWV 151 + + ++ NTL +S+ LL+GF PII A+ LN++ S + KK IQ I Y P+F+S V Sbjct: 70 ISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVV 129 Query: 152 VLGGILATWLADVGIVNNILLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWSAIIYL 211 V+ G++ + + G +NN L + +L P +F + I S IW+ +GW++ +Y Sbjct: 130 VIVGMIFLFFSVGGPINNF---LSMFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYT 186 Query: 212 AAISGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQILVLR 271 A + V P + EAA +DGA FQ++W + +PA+K + I F+LA G++N +++ +++ Sbjct: 187 ATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQ 246 Query: 272 NSLNDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKIND 326 SLN S +I Y+Y G+VS +SYS NQ+ K++N+ Sbjct: 247 TSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNN 301 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 176/298 (59%), Gaps = 3/298 (1%) Query: 34 RRLLAQRHLQTMALLGVVWMIIFNYIPMYGLIISFKEYNIVRSIAEAPWVGLEHFREFLD 93 +R+ ++L M L G+V+ +IF Y+PM+GLII+F++Y + + WVG +HF Sbjct: 30 KRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFT 89 Query: 94 DEDLVNVIKNTLGISLIKLLIGFPLPIIFALFLNEIRSLRYKKAIQTISYLPHFLSWVVL 153 + +++NTL + L L+ FP+PII A+ LNEIR + +K+ +QT+ Y+PHF+SWV++ Sbjct: 90 EPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIV 149 Query: 154 GGI-LATWLADVGIVNNILLSLHLIDQPITYLAEPSYFWTIIISSDIWKELGWSAIIYLA 212 + + D G++N I+ S + + + +L +F + I IW+E GW+ IIY A Sbjct: 150 VSLTYVLFTTDGGVINEIIYS--ITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFA 207 Query: 213 AISGVSPEMYEAATIDGAGRFQKMWFVTLPAIKSTISILFILAVSGVLNSNFDQILVLRN 272 AI+ + P +YEAA +DGA RF+++W +TLPAI+S I +L IL + +L F+ + ++ N Sbjct: 208 AIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLN 267 Query: 273 SLNDSASNVIDYYIYYTGIVSNRFSYSXXXXXXXXXXXXXXXXXXNQVSKKINDTSLF 330 ++N + + D Y+Y G+ +FSYS N ++KK + ++ Sbjct: 268 AMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,025,814 Number of extensions: 916790 Number of successful extensions: 2290 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 2239 Number of HSP's successfully gapped: 152 Length of query: 330 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 223 Effective length of database: 26,037,693 Effective search space: 5806405539 Effective search space used: 5806405539 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 116 (49.3 bits)