BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0010.p (529 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3842 [T] COG4753 Response regulator containing CheY-like recei... 119 2e-26 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 87 5e-17 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 87 1e-16 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 84 7e-16 BH2728 [T] COG4753 Response regulator containing CheY-like recei... 80 7e-15 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 130/545 (23%), Positives = 238/545 (43%), Gaps = 58/545 (10%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M +LI+DDE++ R+GL+ + ++ P+ + + + + D+++ DI+MP Sbjct: 1 MINVLIVDDEQIEREGLKLFL-KDRPNIHIVGEASNGRQAIEKALETQPDLMMMDIKMPG 59 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 +DG+ ++ + + P +E +++S +D FEYA+ +RY VK+YLLKP +E++ L Sbjct: 60 VDGVQAVKEIKQQL-PETE---FIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTAL 115 Query: 121 EQISREW---KEQESSSRRLAQEAEGYRRELRTARLRGLLMXXXXXXXXXXXXXXXXXXX 177 ++I E +E+++ +L Q E ++T + LLM Sbjct: 116 DRIVGEIEQAREEKNDQYKLQQRLEQISSFVQTESILYLLMDHIQDYEWMEWNEWLRTEQ 175 Query: 178 XFTVGVLNFYYNDGTRMKPEEVQGLIERMS------------GPLSGRFTEILTDWEGKL 225 V +F+ G ++ E Q R+ GP G IL E + Sbjct: 176 EGYAVVFSFH-QQGKEIRKTEKQQWHARIKKEIGLQLPKSTVGPFIGHHLPILMLTENEN 234 Query: 226 VLVGSGKE-AFRELARQAAAKXXXXXXXXXXXXXXNPDGFRTGYKEACRALQYTFLPPQA 284 + +E +L + F T Y+EA AL + QA Sbjct: 235 GMTKQEREQVVIQLLHKVKQAVQPAKVKTGVGGIYRLHFFSTSYREALLALDIIYDHKQA 294 Query: 285 SFIDYADLREGRLQFPAPEEELRKLLNMLGT-EREKEIKSL---LGAIFQL-EHLQHLDL 339 S+ Y + R P E KL+ + + + EK +++ + AI + +H H Sbjct: 295 SYYFYDKNVKIRADEQLPIERENKLIEAIKSGDGEKALQAFDHYVQAILRCSKHPLHDMR 354 Query: 340 AYLEHV----GRSINERVLDEVFRLHGEASVEVLKLYRTVGNLYNFRHFHDYYRTLEHLL 395 YL+ + GR +NE LH E + +F F ++ EH Sbjct: 355 KYLQQLFIILGRLLNE------MGLHWETA-------------QDFARFSTVHQVTEH-- 393 Query: 396 ITVNEYIIGIRSAHTEHTDMEEALA-----YIEANYARPLNMAMVSNYVSLNYSYFSEAF 450 +E + +R+ T E++L Y+ ++ PL + ++ ++ L+ Y S+ F Sbjct: 394 -GKSEILHIVRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLF 452 Query: 451 KAYTGESFVLYLKRVRIRHAKALLSENRIKLAGVSEAVGFENSKQFARVFKELEGISPGE 510 K +F Y+ ++R+ HAK LLS + L ++ +G+++ F+RVFK+L G SP + Sbjct: 453 KERFDLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSD 512 Query: 511 YRAKL 515 YR + Sbjct: 513 YRKSI 517 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 80/134 (59%), Gaps = 3/134 (2%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M K+L+ DDE +R GL+++IE E Q+ + D++ITDIRMPV Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 DG+ L+++++ E S +I+SGY+DF YA+ A+R+ D++LKPI ++EL L Sbjct: 61 FDGLQLIQKVN---ETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAAL 117 Query: 121 EQISREWKEQESSS 134 +++ ++++++ Sbjct: 118 IKLAATLDQEKATN 131 Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 59/104 (56%) Query: 413 TDMEEALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHAKA 472 +D+ + YIE +Y +++ +++ +N Y + FK G F YL ++R+ AK Sbjct: 421 SDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEAKK 480 Query: 473 LLSENRIKLAGVSEAVGFENSKQFARVFKELEGISPGEYRAKLL 516 LL + +++ V+E VGF ++ F F+++ ++P EYR KLL Sbjct: 481 LLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNKLL 524 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M ++I+DDE M+R+GL+A+I E I Y+Q D++I DIRMP Sbjct: 1 MYDVMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPE 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVL 120 +DG++L+E + AE +ILSG+ DF YAK A+ + DYLLKP+ +EL L Sbjct: 61 VDGLSLIESIRAE----DSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDELIDSL 116 Query: 121 EQI 123 +++ Sbjct: 117 KKV 119 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 27/211 (12%) Query: 304 EELRKLLNMLGTEREKEIKSLLGAIFQLEHLQHLDLAYLEHVGRSINERVLDEVFRLHGE 363 EEL+ ++ ++ + EKEIK A+FQL +L ++ R H Sbjct: 314 EELKNVV-IVHLQEEKEIKV---ALFQL------------------YSNILHQLVRSHPN 351 Query: 364 ASVEVLKLYRTVGNLYNFRHFHDYYRTLEHLLITVNEYIIGIRSAHTEHTDMEEALAYIE 423 + L G++Y F H L L +Y+I + + +A I Sbjct: 352 MEGVLEPLVMNAGDIYQFEHLPGIMAFLTKQL----KYVIDCMDNGQPDLLLRKMIALIH 407 Query: 424 ANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHAKALLSENRIKLAG 483 +YA+ L + +++ + N +Y + FK YTGE F YL +VRI + K LL + K+ Sbjct: 408 KDYAKNLRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKRLLQKG-YKVYE 466 Query: 484 VSEAVGFENSKQFARVFKELEGISPGEYRAK 514 V+E +G+ N F R FK+ G+SP +R + Sbjct: 467 VAEKIGYANVDYFHRKFKKYVGVSPSTFRKR 497 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%) Query: 4 LLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPVMDG 63 +LI+DDE R+GL+ +E P ++ +E D+IITDIRMP M G Sbjct: 6 VLIVDDEPRSRRGLKRTLEAWSPKLLNVQTAASAKEAITRLNEETIDLIITDIRMPEMSG 65 Query: 64 ITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKPIRREELFGVLEQI 123 + L++ L E P P +++S Y +FEYA +A+ V+ YLLKP+++E+L +E Sbjct: 66 LHLVKALQ-EQNPK---PVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKLIEAVESA 121 Query: 124 SREWKEQE 131 + KEQ+ Sbjct: 122 LQMKKEQD 129 Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 60/98 (61%) Query: 415 MEEALAYIEANYARPLNMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHAKALL 474 + EAL YI+A+ + + + V+ V LN SY S FK T +F YL R R++HAK LL Sbjct: 156 IHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLL 215 Query: 475 SENRIKLAGVSEAVGFENSKQFARVFKELEGISPGEYR 512 ++ ++E G++ +K F ++FKE EG++P +YR Sbjct: 216 VSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYR 253 >BH2728 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 510 Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 7/142 (4%) Query: 372 YRTVGNLYNFRHFHD-YYRTLEHLLITVNEYIIGIRSAHTEHTDMEEALAYIEANYARPL 430 + T+ N R D +Y+ LE V + II + S + +++ LAYIE +++ PL Sbjct: 364 FATINAAKNVREATDCFYQFLE-----VTKQIISVYSNEGS-SSIQKMLAYIEEHHSEPL 417 Query: 431 NMAMVSNYVSLNYSYFSEAFKAYTGESFVLYLKRVRIRHAKALLSENRIKLAGVSEAVGF 490 +++ ++NY N SY S F+ + E F YL +VRIR AK L + I ++ + VG+ Sbjct: 418 SLSQLANYFHFNPSYLSAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGY 477 Query: 491 ENSKQFARVFKELEGISPGEYR 512 + F +VFK+ G+ P YR Sbjct: 478 SDHSYFCKVFKKRTGMPPSRYR 499 Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Query: 1 MKKLLIIDDEKMIRQGLQAMIEREYPSRYSIXXXXXXXXXXXXYQQERRDIIITDIRMPV 60 M +LI+DDEK+IRQG+ + E + + I++TDI MPV Sbjct: 1 MCNVLIVDDEKLIRQGIINFFDWEKEGFQIVGEAANGKDALELISKNEPHIVMTDIVMPV 60 Query: 61 MDGITLLERLSAEAEPGSEGPAVVILSGYDDFEYAKSAIRYRVKDYLLKP-IRREELFGV 119 MDGI L++R+ + P E +++LS +++FEY +S V DY+LKP + ++L Sbjct: 61 MDGIDLVKRVKRDF-PEVE---IIVLSSFEEFEYVRSTFHSGVADYILKPRLNEKDLLKT 116 Query: 120 LEQI 123 L ++ Sbjct: 117 LSEV 120 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 35,248,322 Number of extensions: 1429367 Number of successful extensions: 5466 Number of sequences better than 1.0e-05: 109 Number of HSP's gapped: 5635 Number of HSP's successfully gapped: 120 Length of query: 529 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 418 Effective length of database: 25,576,357 Effective search space: 10690917226 Effective search space used: 10690917226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)