BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0002.p
         (65 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_rpmE [J] COG0254 Ribosomal protein L31                              97   8e-21
PA5049 [J] COG0254 Ribosomal protein L31                               77   5e-15
NMB1956 [J] COG0254 Ribosomal protein L31                              76   1e-14
NMA0495 [J] COG0254 Ribosomal protein L31                              76   1e-14
STM4096 [J] COG0254 Ribosomal protein L31                              73   1e-13

>BS_rpmE [J] COG0254 Ribosomal protein L31
          Length = 70

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 21/65 (32%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I PKY     +C+CGN  +  S           S    F   ++   A G      
Sbjct: 1  MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFFTGKQRDVATGGRVDRF 60

Query: 61 KKYGI 65
           K   
Sbjct: 61 NKRFN 65


>PA5049 [J] COG0254 Ribosomal protein L31
          Length = 71

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAE-LRVEICSSCHPFFTGKQKFMDAGGRVDKF 59
          M++ I P Y   + TC+CGN  +T S   + + +++CS CHPF+TGKQK +D GGR+D+F
Sbjct: 1  MKADIHPTYEAIEATCSCGNVIKTRSTLCKPIHLDVCSECHPFYTGKQKVLDTGGRIDRF 60

Query: 60 KKKYGI 65
          K+++G+
Sbjct: 61 KQRFGV 66


>NMB1956 [J] COG0254 Ribosomal protein L31
          Length = 71

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 2/66 (3%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSV--KAELRVEICSSCHPFFTGKQKFMDAGGRVDK 58
          M+  I P Y+   VTC+CGN F T S   K    +E+CS CHPF+TG QK +D  GRVDK
Sbjct: 1  MKQGIHPNYHEVNVTCSCGNKFATKSAMEKENFNIEVCSLCHPFYTGTQKIVDTTGRVDK 60

Query: 59 FKKKYG 64
          F  K+G
Sbjct: 61 FNNKFG 66


>NMA0495 [J] COG0254 Ribosomal protein L31
          Length = 74

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 3/66 (4%), Positives = 14/66 (21%), Gaps = 2/66 (3%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSV--KAELRVEICSSCHPFFTGKQKFMDAGGRVDK 58
          M    +       +     +     +     E    I +         ++  ++     +
Sbjct: 1  MNLITKIDIPQDGLYRIFNSGLTMRTCSHDTEHNQIINAFLSSEKKENKEETESRPAEIR 60

Query: 59 FKKKYG 64
           +    
Sbjct: 61 TQDLRR 66


>STM4096 [J] COG0254 Ribosomal protein L31
          Length = 70

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGS-VKAELRVEICSSCHPFFTGKQKFMDAGGRVDKF 59
          M+  I P Y     TC+CGN  +T S V  +L +++C  CHPFFTGKQ+ +D GGRV++F
Sbjct: 1  MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERF 60

Query: 60 KKKYGI 65
           K++ I
Sbjct: 61 NKRFSI 66


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,535,136
Number of extensions: 118019
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 14
Length of query: 65
Length of database: 38,378,431
Length adjustment: 37
Effective length of query: 28
Effective length of database: 34,111,073
Effective search space: 955110044
Effective search space used: 955110044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)