BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0016.p (401 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAB0973 [M] COG0438 Glycosyltransferase 70 4e-12 CAC2405 [M] COG0438 Glycosyltransferase 70 4e-12 NMB1705 [M] COG0438 Glycosyltransferase 69 2e-11 PH1844 [M] COG0438 Glycosyltransferase 65 1e-10 NMA1959 [M] COG0438 Glycosyltransferase 65 2e-10 >PAB0973 [M] COG0438 Glycosyltransferase Length = 390 Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 19/210 (9%) Query: 173 EKVTLLPPSWNDSEMMFEAWSKLRSERRRDLRVAPKEPLIGYISSFINK---EKGLEHFV 229 +K+ +PP D+E F +S R + P+ I +N+ KG+ + + Sbjct: 173 KKLIWIPPGV-DTERYFPG----KSYRLHSIYNLPRSAKIVMFIGTMNRGHAHKGVPYLL 227 Query: 230 KMAVLVSKEHPEAKFMVVGTPGDK--SYYDRCVRKVKLEGLTSHFKFVGY--EESLPEVY 285 K V+ + ++ ++VG GD Y C+ G++ F GY E+ LPE Y Sbjct: 228 KAFKYVATQVKDSYLVLVGR-GDMIPEYKKMCMSL----GISKRVIFTGYVEEDILPEFY 282 Query: 286 CAMDMLVVPSL-IREGFGMTALEGLAFGKPVVAYASGGLYEILHAAGCGELLAPVGDIDQ 344 + D++V+PS ++EGFGM +E A GKPV+ GG+ ++ G +L P D + Sbjct: 283 RSSDVIVLPSTTVQEGFGMVLIEAGASGKPVIGTNVGGIKHVIENGKTG-ILVPPKDPFR 341 Query: 345 LAQRVNGLLAEPGLAAVVGSQARERVDAVY 374 LA+ + LL + LA +G R V+ Y Sbjct: 342 LAEAIVTLLTDDNLARKIGKTGRRLVEREY 371 >CAC2405 [M] COG0438 Glycosyltransferase Length = 386 Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 25/198 (12%) Query: 148 IHKNSDEILAISHTAASCFPEDIRAEKVTLLPPSWNDSEMMFEAWSKLRSERRRDLRVAP 207 ++KN I T +KVT+ P N F+ W K D + Sbjct: 144 LYKNDYTITVSDSTKKDLIDIGFDRDKVTIFPEGIN-----FKPWDK-------DSLLKE 191 Query: 208 KEPLIGYISSFINKEKGLEHFVKMAVLVSKEHPEAKFMVVGTPGDKSYYDRCVRKVKLE- 266 K+ + GYI F+N KG++ VK ++ K++P +K ++G D Y ++ + + E Sbjct: 192 KDNIFGYIGRFVN-YKGIDAAVKAYCILKKDYPNSKLWIIGKKKD-DYIEKVLLPILKEN 249 Query: 267 -------GLTSHFKFVGY--EESLPEVYCAMDMLVVPSLIREGFGMTALEGLAFGKPVVA 317 G F G+ E+ + M L+ PS IREGFG+T +E A G P V Sbjct: 250 NITYGNRGQNRDITFWGFVSEKEKLSLMSKMKALLFPS-IREGFGLTVIEAGAVGTPTVV 308 Query: 318 YASGGLYEILHAAGCGEL 335 Y S GL + + G L Sbjct: 309 YNSKGLVDAVDKGKAGYL 326 >NMB1705 [M] COG0438 Glycosyltransferase Length = 354 Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 39/282 (13%) Query: 105 FIISSTCVHALPAMAAKSLGIPVVWKISETITDNDFTSISTELIHKNSDEILAIS----- 159 +I + + AL + K G+ +++ + + N T LI KN+D + +S Sbjct: 87 LMIHTGKIAALSILLKKLTGVRLIF-VKHNVVANK-TDFYHRLIQKNTDRFICVSRLVYD 144 Query: 160 -HTAASCFPEDIRAEKVTL----LPPSWN--DSEMMFEAWSKLRSERRRDLRVAPKEPLI 212 TA + F E R + PPS DS A++ R++P Sbjct: 145 VQTADNPFKEKYRIVHNGIDTGRFPPSQEKPDSRFFTVAYAG---------RISP----- 190 Query: 213 GYISSFINKEKGLEHFVKMAVLVSKEHPEAKFMVVGTPGDKSYYDRCVRKVKLEGLTSHF 272 EKGLE+ ++ V++ +++P+ + + G G Y R R V G Sbjct: 191 ---------EKGLENLIEACVILHRKYPQIRLKLAG-DGHPDYMCRLKRDVSASGAEPFV 240 Query: 273 KFVGYEESLPEVYCAMDMLVVPSLIREGFGMTALEGLAFGKPVVAYASGGLYEILHAAGC 332 F G+ E L Y D++V+PSL+ E FG++ E + V++ G EI+ Sbjct: 241 SFEGFTEKLASFYRQSDVVVLPSLVPEAFGLSLCEAMYCRTAVISNTLGAQKEIVEHHQS 300 Query: 333 GELLAPVGDIDQLAQRVNGLLAEPGLAAVVGSQARERVDAVY 374 G LL + + LA + L+ P + + A + V A + Sbjct: 301 GILLDRLTP-ESLADEIERLVLNPETKNALATAAHQCVAARF 341 >PH1844 [M] COG0438 Glycosyltransferase Length = 381 Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 25/231 (10%) Query: 150 KNSDEILAISHTAASCFPEDIRAEKVTLLPPSWNDSEMMFEAWSKLRSERRRDLRVAPKE 209 K S I+A+S AA F E + V L+ P+ D E F A R + + + + Sbjct: 150 KYSHRIIAVS-KAAKSFIEHFTSVPV-LIVPNGVDDERFFPA----RDKEKIKAKFGLEG 203 Query: 210 PLIGYISSFINKEKG----LEHFVKMAVLVSKEHPEAKFMVVGTPGDKSYYDRCVRKVKL 265 ++ Y+S ++ KG L F K+ +A ++VG G+ + + + K Sbjct: 204 NVVLYVSR-MSYRKGPHVLLNAFSKIE--------DATLVMVGN-GEMLPFLKA--QTKF 251 Query: 266 EGLTSHFKFVGY--EESLPEVYCAMDMLVVPSLIREGFGMTALEGLAFGKPVVAYASGGL 323 G+ + F+GY ++ LPEV+ D+ V+PS+ E FG+ LE +A G P++A GG+ Sbjct: 252 LGIENKVVFMGYVPDDILPEVFRMADVFVLPSISSEAFGIVILEAMASGVPIIATDVGGI 311 Query: 324 YEILHAAGCGELLAPVGDIDQLAQRVNGLLAEPGLAAVVGSQARERVDAVY 374 E++ G LL P G+ +L + + LL L G+ R V+ Y Sbjct: 312 PEVIKENSAG-LLVPPGNELKLREAIEKLLKNEELRKWYGNNGRRSVEEKY 361 >NMA1959 [M] COG0438 Glycosyltransferase Length = 223 Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 0/264 (0%), Positives = 0/264 (0%), Gaps = 39/264 (14%) Query: 105 FIISSTCVHALPAMAAKSLGIPVVWKISETITDNDFTSISTELIHKNSDEILAIS----- 159 I + + L + V T H EI+++ Sbjct: 87 VICFAKVLEQLKPDIVYADAADVKA-ERFAENLRR-QYAKTNPAHAKKIEIISMHQADAI 144 Query: 160 -HTAASCFPEDIRAEKVTL----LPPSWN--DSEMMFEAWSKLRSERRRDLRVAPKEPLI 212 ++ + S + + Sbjct: 145 YPVVSAASIIAKVRRDELIEEIKKEWSVDFGSGYPSDPKTKA---------FLLK----- 190 Query: 213 GYISSFINKEKGLEHFVKMAVLVSKEHPEAKFMVVGTPGDKSYYDRCVRKVKLEGLTSHF 272 ++ Sbjct: 191 ---------WGKEHDGKFPEIVRQSWQTVENIREEL- 240 Query: 273 KFVGYEESLPEVYCAMDMLVVPSLIREGFGMTALEGLAFGKPVVAYASGGLYEILHAAGC 332 Sbjct: 241 300 Query: 333 GELLAPVGDIDQLAQRVNGLLAEP 356 Sbjct: 301 - 323 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,119,791 Number of extensions: 1328441 Number of successful extensions: 4124 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 4157 Number of HSP's successfully gapped: 60 Length of query: 401 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 292 Effective length of database: 25,807,025 Effective search space: 7535651300 Effective search space used: 7535651300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 117 (49.7 bits)