BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0015.p (178 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0369 [J] COG1670 Acetyltransferases, including N-acetylases o... 65 5e-11 BS_yjdG [J] COG1670 Acetyltransferases, including N-acetylases o... 64 2e-10 CAC3423 [J] COG1670 Acetyltransferases, including N-acetylases o... 64 2e-10 lin2089 [J] COG1670 Acetyltransferases, including N-acetylases o... 57 2e-08 DR0653 [J] COG1670 Acetyltransferases, including N-acetylases of... 49 3e-06 >CAC0369 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 170 Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 3 LKSTRLDLRPLTLAQLSLAGLNY-AGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDPL 61 L+S RL LRPL+ L +N G ++I+ + D A+ + K+ + P Sbjct: 6 LESERLLLRPLSFDDL----INIEKGTINLIKVHINQNAIFDFTKSAISKKIKKMEKVPK 61 Query: 62 N-YPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICG 120 + + W T W ++ + + IGFI KG P++ G V VGY+I+ +R+QG TEAL + Sbjct: 62 DIHEWYTYWLIVDKNTKSGIGFIGFKGTPDEGGHVEVGYSISCAYRKQGLMTEALSLLSN 121 Query: 121 WIFSDPQALWVIA-DTEKDNAASHKVLKHLGAQKHREAGELIWW 163 W +P + A K N S++VLK+ + + E ++ Sbjct: 122 WASKNPDLKGITACKVLKTNTGSNRVLKNCNFKLASSSEEFNYY 165 >BS_yjdG [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 168 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 1/161 (0%) Query: 3 LKSTRLDLRPLTLAQLSLAGLNYAGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDPLN 62 L++ RL L+ + + L A ++ G +G + + A+ ++L Sbjct: 4 LETNRLRLQTIDIPLLDAASKQDHQAIKELGYETNGEWPNSDFFEAIPY-FREILVKNNG 62 Query: 63 YPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICGWI 122 +W +++++ ++G G P++ G + +G+ N+ HRR+GY EA Q + W Sbjct: 63 TKGFDSWIIVKKDNYEIVGGTGFLGDPDENGMIEIGFATNKSHRRKGYCVEAAQKLINWA 122 Query: 123 FSDPQALWVIADTEKDNAASHKVLKHLGAQKHREAGELIWW 163 S + A E DN S K L+ LG + ++ E W Sbjct: 123 LSRETVSRITARCEHDNLGSQKTLEKLGFILNHKSAEYKHW 163 >CAC3423 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 172 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 53/102 (51%) Query: 69 WAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICGWIFSDPQA 128 W +I+++ ++IG I PN++GEV VGY + E R +G+ EAL I WI Sbjct: 71 WMIIKKDNMQVIGDIGFHSEPNEKGEVEVGYCLVEDERGKGFGFEALSAIMDWIHFQKNV 130 Query: 129 LWVIADTEKDNAASHKVLKHLGAQKHREAGELIWWRIARPDS 170 V A +N S ++L+ +G ++ + I+W +P S Sbjct: 131 SIVKAQCLIENKPSARILQKVGMKEIDRDMDSIYWEFIKPVS 172 >lin2089 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 301 Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 6/146 (4%), Positives = 24/146 (16%), Gaps = 2/146 (1%) Query: 3 LKSTRLDLRPLTLAQLSLAGLNYAGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDPLN 62 KS + + + + L L + + + + + Sbjct: 4 DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 Query: 63 YPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICGWI 122 + + + + +V T + Sbjct: 64 PGLHM--EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVIL 121 Query: 123 FSDPQALWVIADTEKDNAASHKVLKH 148 + + + Sbjct: 122 AVNKVDNVQEKADLLPHLQFLASQMN 147 >DR0653 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 176 Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 68 NWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICGWIFSDPQ 127 ++ + RE++ +G + KG + GE+ +GY QGYATEA+ + + P+ Sbjct: 72 SFVAVTREDRTAVGLLGSKGSVSVGGELEIGYGFIPSAWNQGYATEAVHALTVHLLGQPR 131 Query: 128 ALWVIADTEKDNAASHKVLKHLG-AQKHR----EAGELIWWRIA 166 V A T N AS +VL+ +G A+ R E G L W + Sbjct: 132 VQTVTAQTALGNRASERVLEKIGFARTDRRWDDEEGALTLWAVG 175 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,253,141 Number of extensions: 577612 Number of successful extensions: 787 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 796 Number of HSP's successfully gapped: 5 Length of query: 178 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 79 Effective length of database: 26,960,365 Effective search space: 2129868835 Effective search space used: 2129868835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 112 (47.8 bits)