BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0014.p
         (139 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1544 [F] COG0295 Cytidine deaminase                                139   1e-33
SP0844 [F] COG0295 Cytidine deaminase                                 120   5e-28
AGc2094 [O] COG0625 Glutathione S-transferase                          91   4e-19
AGc2092 [M] COG3637 Opacity protein and related surface antigens       91   4e-19
AGc2091 [IQR] COG1028 Dehydrogenases with different specificitie...    91   4e-19

>CAC1544 [F] COG0295 Cytidine deaminase
          Length = 132

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 93/134 (69%), Gaps = 2/134 (1%)

Query: 1   MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALF 60
           M+ + L+ +A++AR  AY PYS+F VGAA++  +G ++ GCN+ENA++G TNCAERTA+F
Sbjct: 1   MDYSELVYKALEARKKAYAPYSKFKVGAAVIADNGEIYTGCNIENASYGATNCAERTAIF 60

Query: 61  RAIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVR 120
           +A+++GH      AIA++        PCG+CRQV+ E  + DMK++LG   G+    T+ 
Sbjct: 61  KAVSEGHT--KLNAIAIVGVEKDYTYPCGICRQVIAEFASEDMKIVLGKNSGEYIVKTLE 118

Query: 121 DLLPGAFGPTDLEQ 134
           ++LPGAF   DL++
Sbjct: 119 EILPGAFTKEDLKK 132


>SP0844 [F] COG0295 Cytidine deaminase
          Length = 129

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 4/132 (3%)

Query: 1   MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALF 60
           M +  L++ AI+   +AY+PYS F +GA L+ +DG V+ G N+ENA++  TNC ERTA+F
Sbjct: 1   MATTELIELAIETSKHAYVPYSHFPIGAVLVAKDGSVYTGVNIENASYPLTNCGERTAIF 60

Query: 61  RAIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVR 120
           +AI++G +   F  + V   T+ P+SPCG CRQVM E    D+KV L        E TV 
Sbjct: 61  KAISEGQRE--FSELIVYGQTEKPISPCGACRQVMAEFFEQDLKVTLVAKDKSTVEMTVG 118

Query: 121 DLLPGAFGPTDL 132
           +LLP +F  TDL
Sbjct: 119 ELLPYSF--TDL 128


>AGc2094 [O] COG0625 Glutathione S-transferase
          Length = 301

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 11/126 (8%), Positives = 26/126 (20%), Gaps = 2/126 (1%)

Query: 2   ESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALFR 61
            +        K         SR            H               +  E+ A+ R
Sbjct: 17  PNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINR 76

Query: 62  AIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVRD 121
            +       +      +       +      ++++         ++  +          D
Sbjct: 77  LMNKAAS--SSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKAD 134

Query: 122 LLPGAF 127
           LLP   
Sbjct: 135 LLPHLQ 140


>AGc2092 [M] COG3637 Opacity protein and related surface antigens
          Length = 145

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 2   ESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALFR 61
           +S  L + A++A A AY PYS+F VGAA+  +DG ++ G N+EN +F    CAE +A+  
Sbjct: 17  KSHALFEAAVEAMAFAYAPYSKFPVGAAIRAEDGKIYTGANIENISFPQGWCAEPSAISA 76

Query: 62  AIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVRD 121
            I  G K      +AVIA+     SPCG CRQ + E   P+ K+ L +  G  +  T+ +
Sbjct: 77  MIMGGAK--KISEVAVIAEKLPLCSPCGGCRQKIAEFATPETKIYLCDETGVQKVMTMEE 134

Query: 122 LLPGAF 127
           LLP  F
Sbjct: 135 LLPSVF 140


>AGc2091 [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases)
          Length = 218

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 9/126 (7%), Positives = 30/126 (23%), Gaps = 2/126 (1%)

Query: 2   ESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALFR 61
             ++  +  + + + +     R                  + +    G +       L R
Sbjct: 17  RQSMKQELILASSSASRQMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALELAR 76

Query: 62  AIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVRD 121
           A A           A++   D  ++           +      ++  + +     +    
Sbjct: 77  AKALAVS--ALHPEALVLGCDQTMALGTRVYHKPKNMAEAATHLLSLSGKVHRLNSAAVL 134

Query: 122 LLPGAF 127
           +  G  
Sbjct: 135 VHNGKV 140


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,054,183
Number of extensions: 371177
Number of successful extensions: 529
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 44
Effective length of database: 27,421,701
Effective search space: 1206554844
Effective search space used: 1206554844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)