BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0011.p
         (728 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1508 [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases     256   8e-68

>STM1508 [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases
          Length = 488

 Score =  256 bits (655), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 19/383 (4%), Positives = 54/383 (14%), Gaps = 27/383 (7%)

Query: 344 FLAPVAIGAMLITMLL-DMSLAYFCSILFSILASIMLNVQQNTIFDFTFGFFALI----V 398
               V +    + + +  +           I            +                
Sbjct: 87  TARVVGVVKAALHVQVDGLERVLAAMCEPQIAI----------VSLTITEKGYCHSPATG 136

Query: 399 SYVAIFATHRAGQRSTLLKGGIMVSL-IGSVTVFMLNVLAGGVWNQTQALYAIGFSFASG 457
             +       A  ++          +             AG       +           
Sbjct: 137 QLLLEHPMIAADLQNPHQPLTAPGIIVEALARRKA----AGLPAFTVMS-CDNMPENGHV 191

Query: 458 LLTAVLVIGLMPFFEATFGILSALKLVELSNPNHPLLRKLLTETPGTYHHSVMVGNLSEA 517
               V         E    I   +                 T         V        
Sbjct: 192 TRQVVTAYAREVDAELAIWIEQNVTFPSTMVDRIVPAVTPETLDKIEQLTGVRDPAGVAC 251

Query: 518 AAEAIGADGLLCRVGSYYHDIGKTKRPFYFIENQNNMENPHDSIEPMLSKSIIVAHARDG 577
                         G    +          +  +       +     L+    +A  +  
Sbjct: 252 EPFRQWVIEDTFVAGRPLWENAGATLVADVVPFEEMKLRMLNGSHSFLAYLGYLAGYQHI 311

Query: 578 VEMLKEYKLPKPIRDIAEQHHGTTFLHYFYHKALKLAEEKGVEPDFTEEDFRYPGPKAQS 637
            + + +       + +  +    T             +                  +   
Sbjct: 312 NDCMADDNYRLTAQALMLREQAPTLKVQGVDLQRYADQ------LIARYRNPALRHRTWQ 365

Query: 638 KESAVVGIADSVEAAVRSLRKPTVVQVETMIEKIIKSRLDDHQFDECDLTIKELDIIART 697
                                      + +   +          DE    I   D +   
Sbjct: 366 IAMDGSQKLPQRMLDSVRWHLANHSDFDLLALGVAGWMRYVGGVDEQGKAIDVSDPLLPV 425

Query: 698 LKETVMGIFHSRIEYPEDVKKPK 720
           ++  V             +   +
Sbjct: 426 IQRAVANSEEGASRVKALLGMAE 448


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 46,311,517
Number of extensions: 1855104
Number of successful extensions: 4109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 1
Length of query: 728
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 614
Effective length of database: 25,230,355
Effective search space: 15491437970
Effective search space used: 15491437970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)